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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00659 ATGGGGATTGATGTGCTTATAACGAGAAGAATGGCGGTTTTCTTCGTATTTGGTATGTGGGTTGTGGTGGCGGCCGCCGTGGAAGACAAGGGGGTAACTGAAATTACAGCACTTTCACCGCCGTCGTCGACGTCATCAAGAAGACCTAGTGTTGTGAATATTGGAGCTTTATTAACAGTAAATTCAGTTATTGGGCGGTCTGTAAAACCTGCAATTATTGCTGCTGTTGATGATGTTAATTCTAATCCTTCCATTCTTGGAGAAACCCATTTGAATCTTCTTTTGCATGATACCAATTGCAGTGGATTTCTTGGCACCATTGAAGCATTGCAGCTTATGGAGAAAAATGTGGTGGCTGCAATCGGACCACAATCTTCGACAATCGCACATGTTATCTCGCACGTCGTCAACGAGCTTCATGTTCCCCTTCTTTCATTCGGCGCAACCGATCCAACACTCGCAGCTCTCCAATACCCTTATTTCCTCCGAACCACACAAAACGATTACTACCAAATGTCCGCCATTGCCAACCTCATCGAATACTTCGAATGGAAAGAAGTAATCGCCATTTTTGTCGACGACGATTACGGCAGAAATGGCATTTCATCGTTAGGCGATTCACTCGCCAAGAAACGAGCCAAGATTTCTTACAAAGCCGCATTCCCTCCCGGAGCTCCGGCAACCGACATCAGCGACTTATTAACCGGAGTTAATTTAATGGAATCTCGCGTTTACGTTGTTCATGTGAATCCTGATTCAGGTCTGCAAATTTTTGCCATTGCGAAAAAGCTCGGAATGATGACGACTGATTACGTCTGGATCACCACTGAATGGCTTCCGGCGGTTCTTGATTCATCGGAAACACCAAACTCCGACACCATGGATCTGTTACAAGGAGTCGTAACCCTTCGTCAACACACTCCGAATTCTAATCTGAAAAAGAATTTTGCTTTGAAATGGAAAAACATCAAACAAAAGGAAACATCTAGTTTCAATTCTTACGCGCTTTACGCTTACGATTCCGTTTGGTTACTCGCTCACGCTCTCGATACTTTCTTAAAAACCAACGAAAAAATCACATTTTCTTCCGACCCGAAACTCCAAAACACCACTGGAAGTGAGCTCCGGTTATCCGCGCTCCAAATGTTCAACGAAGGCCCGCAGCTACTCAAAATACTTTTATCTACGAACTTCACGGGCTTAACGGGCCAGTTTAGGTTCGATCAGGATAAGAATCTGATTCATCCGGCTTATGATATTATTAACATTGGTGGAACGGGCTTACGAACGATTGGATATTGGTCAAACTACTCGGGTTTATCAATTAGTTCTCCGGAATCATTGTATGCAAAACCTCCGAATAGTTCTATGAGCAGTAAACATCTTTATAGCGTAATTTGGCCTGGTGAAACGAGTGTAACGCCTAAAGGATGGGTGTTCCCAAATAATGGGAAGCCGTTGCGGATTGCGGTGCCGTATCGACATAGTTATAAGGAGGTTGTAACGAAAGATGTTAGGTCTCCACAAGGGGTTAGAGGGTATAGTATTGATGTTTTTGAAGCCGCGGTGACTTTATTACCGTATCCTGTGCCTCGGAAATATATTCTTTACGGAGATGGAATACGAAACCCGAGTTACAGTAATCTTGTGGCTGCTGTTGCTGAAAATAAATATGATGCAGCAGTTGGAGATATTACGATTATTACGAATAGAACAAGGATAGTTGACTTTACGCAGCCTTACATAGAATCGGGGCTTGTTATAGTTGTTCCGGTGAAGAAATCGAAGACCAGTCCATGGGCTTTTCTCAAGCCGTTCACCATCGAAATGTGGCTCGTCACTGGTGGATTCTTTTTGCTCGTTGGATTCGTTGTTTGGATTCTCGAGCATCGTTTGAATCATGAGTTCCGTGGGCCTCCGAGTCAACAAATCATGACGATCTTCTGGTTTAGTTTCTCCACCATGTTCTTTTCACATAGGGAGAACACGGTTAGCACGTTGGGGCGCTTAGTTCTGCTCTTATGGCTGTTTGTTGTGTTGATCATCAATTCAAGCTACACAGCCAGTTTGACTTCGATCCTCACCGTTCAACAGTTGACTTCAAGAATCGAGGGGTTAGATAGCTTGATCTCGAGTAACGAACCCATTGGAGTTCAAGACGGATCTTTTGCATATAATTATTTGATCCAAGAGCTTAACGTTGCAGAATCTAGGATCAGATCATTGAAAGACAAAGTGGACTACTTGAACGCCCTTCATCTCGGTCCAAAACATGGCGGTGTAGCTGCCATTGTTGACGAGCTTCCGTATATCGAGCTTTTCATGACTTACACCAAGTGTGAGTTCAAGATCGTTGGTCGGGAGTTCACCAAAAGTGGCTGGGGATTCGCATTCCAGAGGGATTCTCCTCTAGCGCTCGATTTATCAACAGCCATCCTCCAACTCTCCGAAAACGGAGAGCTACAAAGAATCCACGACAAATGGCTCACATCCAGTTCATGCTCGTCCCAAGTCGCCGAAATTGACGATAATAGCCTTTCGTTAAGCAGCTTCTGGGGTCTGTTTCTCATCTGTGGTATCGCATGCTTCATTTCGCTTAGCGTTTATTTTTGCCGAGTGTTGTGTCAATACCGTAGTTTTAATCCCCATGAAGAAGAGGCTCATGAGATTTCAGAACCCGACTCCGCTCGGCGGAGTGTGAGACGAACTTTACGTTCAACAAGTTTAAAAGATTTGATCGATTTTTATGATAAGAAAGAGGCGGAGATCAAGGACATGTTGAGGCGAAGCAAGCGTCAAGTTAACGGGGATATCGATTCGCCGTCTTGA 2829 44.33 MGIDVLITRRMAVFFVFGMWVVVAAAVEDKGVTEITALSPPSSTSSRRPSVVNIGALLTVNSVIGRSVKPAIIAAVDDVNSNPSILGETHLNLLLHDTNCSGFLGTIEALQLMEKNVVAAIGPQSSTIAHVISHVVNELHVPLLSFGATDPTLAALQYPYFLRTTQNDYYQMSAIANLIEYFEWKEVIAIFVDDDYGRNGISSLGDSLAKKRAKISYKAAFPPGAPATDISDLLTGVNLMESRVYVVHVNPDSGLQIFAIAKKLGMMTTDYVWITTEWLPAVLDSSETPNSDTMDLLQGVVTLRQHTPNSNLKKNFALKWKNIKQKETSSFNSYALYAYDSVWLLAHALDTFLKTNEKITFSSDPKLQNTTGSELRLSALQMFNEGPQLLKILLSTNFTGLTGQFRFDQDKNLIHPAYDIINIGGTGLRTIGYWSNYSGLSISSPESLYAKPPNSSMSSKHLYSVIWPGETSVTPKGWVFPNNGKPLRIAVPYRHSYKEVVTKDVRSPQGVRGYSIDVFEAAVTLLPYPVPRKYILYGDGIRNPSYSNLVAAVAENKYDAAVGDITIITNRTRIVDFTQPYIESGLVIVVPVKKSKTSPWAFLKPFTIEMWLVTGGFFLLVGFVVWILEHRLNHEFRGPPSQQIMTIFWFSFSTMFFSHRENTVSTLGRLVLLLWLFVVLIINSSYTASLTSILTVQQLTSRIEGLDSLISSNEPIGVQDGSFAYNYLIQELNVAESRIRSLKDKVDYLNALHLGPKHGGVAAIVDELPYIELFMTYTKCEFKIVGREFTKSGWGFAFQRDSPLALDLSTAILQLSENGELQRIHDKWLTSSSCSSQVAEIDDNSLSLSSFWGLFLICGIACFISLSVYFCRVLCQYRSFNPHEEEAHEISEPDSARRSVRRTLRSTSLKDLIDFYDKKEAEIKDMLRRSKRQVNGDIDSPS 942
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00659 942 Coils Coil 725 752 - -
Sain12g00659 942 Gene3D - 488 598 - -
Sain12g00659 942 Pfam Receptor family ligand binding region 68 425 IPR001828 -
Sain12g00659 942 PIRSF IGluLR-plant 6 941 IPR017103 -
Sain12g00659 942 CDD GluR-Plant 485 829 - -
Sain12g00659 942 Gene3D - 599 726 - -
Sain12g00659 942 SUPERFAMILY Periplasmic binding protein-like II 462 831 - -
Sain12g00659 942 SUPERFAMILY Periplasmic binding protein-like I 47 479 IPR028082 -
Sain12g00659 942 FunFam Glutamate receptor 167 338 - -
Sain12g00659 942 CDD PBP1-GABAb-receptor-plant 53 441 IPR044440 -
Sain12g00659 942 Pfam Ligand-gated ion channel 831 862 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sain12g00659 942 Gene3D - 167 440 - -
Sain12g00659 942 Gene3D - 71 415 - -
Sain12g00659 942 Gene3D - 727 833 - -
Sain12g00659 942 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 52 891 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sain12g00659 942 FunFam Glutamate receptor 482 599 - -
Sain12g00659 942 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 125 153 - -
Sain12g00659 942 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 338 350 - -
Sain12g00659 942 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 65 81 - -
Sain12g00659 942 SMART GluR-14 486 831 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sain12g00659 942 FunFam Glutamate receptor 725 833 - -
Sain12g00659 942 FunFam Glutamate receptor 599 729 - -
Sain12g00659 942 Pfam Bacterial extracellular solute-binding proteins, family 3 543 607 IPR001638 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00659 K05387 glutamate receptor, ionotropic, plant
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:15396395 Sain3g00391 Sain-Chr3:9235624 dispersed
Sain Sain-Chr12:15385458 Sain12g00659 Sain-Chr12:15396395 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain1g01242 . 8 677 Ion Channels gene family AT5G46240 54.485 0.0 800.0
Sain1g01385 . 15 848 Ion Channels gene family AT2G29120 34.696 2.03e-151 469.0
Sain1g01709 ACH 60 352 Ion Channels gene family AT5G55630 56.655 7.68e-124 357.0
Sain1g01766 . 1 716 Ion Channels gene family AT5G53130 64.512 0.0 951.0
Sain2g01185 . 1 725 Ion Channels gene family AT2G24610 66.576 0.0 996.0
Sain3g00041 . 31 324 Ion Channels gene family AT2G29100 25.325 3.08e-25 108.0
Sain3g00042 . 22 608 Ion Channels gene family AT2G29100 26.368 1.19e-57 206.0
Sain3g00043 . 680 890 Ion Channels gene family AT2G17260 37.736 5.07e-39 142.0
Sain3g00045 . 76 822 Ion Channels gene family AT2G24720 30.144 5.42e-96 319.0
Sain3g00047 . 23 774 Ion Channels gene family AT5G11210 28.74 5.20e-96 317.0
Sain3g00048 . 55 774 Ion Channels gene family AT5G11210 30.274 2.46e-99 327.0
Sain3g00049 . 28 822 Ion Channels gene family AT2G24720 28.765 1.98e-102 337.0
Sain3g00052 . 28 769 Ion Channels gene family AT2G24720 29.551 3.22e-98 322.0
Sain3g00054 . 28 769 Ion Channels gene family AT2G24720 29.551 3.07e-97 319.0
Sain3g00056 . 28 769 Ion Channels gene family AT2G24720 29.551 3.22e-98 322.0
Sain3g00143 . 1 87 Ion Channels gene family AT5G53130 42.045 7.15e-14 64.3
Sain3g00329 . 11 913 Ion Channels gene family AT2G29120 44.791 0.0 799.0
Sain3g00391 . 58 932 Ion Channels gene family AT1G05200 65.271 0.0 1218.0
Sain3g01141 . 6 795 Ion Channels gene family AT4G22200 64.087 0.0 1051.0
Sain3g02096 ACH 3 717 Ion Channels gene family AT5G57940 75.623 0.0 1103.0
Sain3g02353 ACH 7 856 Ion Channels gene family AT2G26650 67.281 0.0 1216.0
Sain3g03489 . 709 805 Ion Channels gene family AT3G02850 47.525 8.11e-28 103.0
Sain3g04106 . 41 813 Ion Channels gene family AT5G48410 39.098 0.0 556.0
Sain3g04109 . 26 90 Ion Channels gene family AT5G48400 43.077 7.77e-14 63.5
Sain3g04111 ACH 622 819 Ion Channels gene family AT3G07520 38.614 6.28e-41 147.0
Sain3g04112 . 722 813 Ion Channels gene family AT5G48410 38.043 2.27e-16 72.0
Sain3g04113 ACH 199 813 Ion Channels gene family AT5G48410 39.724 2.27e-147 447.0
Sain3g04114 ACH 43 176 Ion Channels gene family AT3G07520 37.5 4.45e-24 95.9
Sain3g04185 . 79 405 Ion Channels gene family AT4G01840 62.5 2.70e-143 411.0
Sain4g00335 . 571 755 Ion Channels gene family AT2G25600 29.268 2.87e-08 55.5
Sain4g02495 . 34 733 Ion Channels gene family AT3G02850 62.429 0.0 918.0
Sain5g00052 . 3 898 Ion Channels gene family AT3G51480 59.735 0.0 1143.0
Sain5g01791 . 21 699 Ion Channels gene family AT5G14870 68.705 0.0 976.0
Sain5g01910 ACH 8 773 Ion Channels gene family AT5G40890 76.693 0.0 1198.0
Sain6g00328 . 43 704 Ion Channels gene family AT3G48010 62.443 0.0 862.0
Sain6g00514 . 2 748 Ion Channels gene family AT1G19780 64.908 0.0 967.0
Sain7g00118 ACH 16 827 Ion Channels gene family AT3G02850 69.682 0.0 1214.0
Sain7g01049 . 250 283 Ion Channels gene family AT5G27100 47.059 6.17e-06 40.4
Sain7g02255 . 15 899 Ion Channels gene family AT2G29120 43.722 0.0 724.0
Sain8g02069 . 539 702 Ion Channels gene family AT5G37500 29.825 9.32e-08 53.9
Sain9g00074 . 60 356 Ion Channels gene family AT5G55630 29.47 3.65e-37 134.0
Sain9g00075 ACH 53 358 Ion Channels gene family AT5G55630 55.229 9.53e-123 356.0
Sain9g00078 ACH 73 351 Ion Channels gene family AT5G55630 40.0 1.41e-57 196.0
Sain9g02219 . 1 157 Ion Channels gene family AT4G03560 59.877 8.72e-60 195.0
Sain9g03425 . 83 715 Ion Channels gene family AT5G53130 59.688 0.0 778.0
Sain9g03429 . 385 597 Ion Channels gene family AT1G01340 45.701 4.39e-60 198.0
Sain9g03568 ACH 17 434 Ion Channels gene family AT4G18160 58.852 4.43e-170 482.0
Sain10g01113 . 30 661 Ion Channels gene family AT4G32650 60.41 0.0 763.0
Sain10g01879 . 551 726 Ion Channels gene family AT2G25600 34.463 4.99e-15 71.2
Sain10g01958 ACH 7 634 Ion Channels gene family AT2G28260 57.643 0.0 760.0
Sain10g02554 ACH 1 678 Ion Channels gene family AT2G28260 71.286 0.0 1024.0
Sain10g03591 . 30 157 Ion Channels gene family AT4G32650 56.25 1.04e-44 152.0
Sain10g05324 . 3 856 Ion Channels gene family AT2G26650 56.542 0.0 1011.0
Sain11g00092 . 1 716 Ion Channels gene family AT5G53130 75.552 0.0 1113.0
Sain11g01186 ACH 30 637 Ion Channels gene family AT2G28260 55.172 0.0 727.0
Sain11g01323 ACH 548 727 Ion Channels gene family AT4G32500 34.314 3.36e-21 95.9
Sain11g01466 ACH 1 678 Ion Channels gene family AT2G28260 69.873 0.0 1018.0
Sain11g01645 ACH 2 773 Ion Channels gene family AT3G27170 70.988 0.0 1143.0
Sain11g02433 . 4 888 Ion Channels gene family AT3G51480 60.045 0.0 1131.0
Sain11g02667 ACH 20 824 Ion Channels gene family AT3G02850 65.309 0.0 1108.0
Sain11g04088 . 5 745 Ion Channels gene family AT3G17700 58.579 0.0 830.0
Sain11g04098 . 6 745 Ion Channels gene family AT3G17700 61.295 0.0 900.0
Sain11g04724 . 12 912 Ion Channels gene family AT1G42540 64.706 0.0 1242.0
Sain12g00258 ACH 58 357 Ion Channels gene family AT5G55630 60.065 2.02e-131 378.0
Sain12g00658 . 14 901 Ion Channels gene family AT2G32400 53.768 0.0 1000.0
Sain12g00659 . 56 932 Ion Channels gene family AT1G05200 65.271 0.0 1229.0
Sain12g01288 ACH 11 779 Ion Channels gene family AT5G49890 77.013 0.0 1172.0
Sain13g00375 ACH 527 713 Ion Channels gene family AT5G37500 32.292 2.10e-12 68.6
Sain13g00592 ACH 1 717 Ion Channels gene family AT5G57940 76.607 0.0 1135.0
Sain13g00764 . 379 762 Ion Channels gene family AT5G11210 31.606 1.51e-56 199.0
Sain13g00773 . 379 767 Ion Channels gene family AT5G11210 34.19 5.62e-62 214.0
Sain13g01086 . 1 791 Ion Channels gene family AT5G26240 81.454 0.0 1231.0
Sain13g01588 ACH 6 779 Ion Channels gene family AT5G49890 76.357 0.0 1180.0
Sain13g01720 . 20 726 Ion Channels gene family AT5G15410 70.304 0.0 974.0
Sain13g02494 . 77 692 Ion Channels gene family AT5G54250 76.861 0.0 997.0
Sain13g02495 . 79 692 Ion Channels gene family AT5G54250 73.906 0.0 940.0
Sain13g02642 ACH 58 357 Ion Channels gene family AT5G55630 53.333 1.92e-111 327.0
Sain14g01754 ACH 19 431 Ion Channels gene family AT4G18160 62.201 8.27e-175 494.0
Sain14g02500 ACH 57 358 Ion Channels gene family AT5G55630 52.318 9.47e-118 342.0
Sain15g01161 ACH 28 816 Ion Channels gene family AT5G48410 36.94 1.67e-173 521.0
Sain16g01171 . 1 717 Ion Channels gene family AT4G30360 68.182 0.0 995.0
Sain16g01274 ACH 1 745 Ion Channels gene family AT2G23980 73.565 0.0 1122.0
Sain16g01372 ACH 505 713 Ion Channels gene family AT5G37500 28.899 3.08e-12 67.8
Sain16g01399 . 7 765 Ion Channels gene family AT5G33280 73.158 0.0 1124.0
Sain16g01534 ACH 7 857 Ion Channels gene family AT2G26650 66.591 0.0 1212.0
Sain16g01706 ACH 54 827 Ion Channels gene family AT3G07520 38.258 4.40e-168 506.0
Sain16g01708 ACH 43 840 Ion Channels gene family AT3G07520 36.496 3.18e-165 499.0
Sain16g01713 ACH 44 830 Ion Channels gene family AT5G48410 36.22 1.11e-162 493.0