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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00666 ATGAAGATCCAGTGCGACGTCTGTCACAAAGCCGAAGCCGCAGTTTACTGCACCGCCGACGAAGCCTCCCTCTGCTCCGACTGCGACCACCGTGTTCACCATGCCAATAAGCTCGCCAACAGACATCCTCGATTCTCTCTCCTCCATCCTTCTTTCAAGGACTCACCTCGCTGCGATATCTGTCAGGAGCGGCGAGCATTTCTGTTTTGCAAAGAAGATCGAGCAATTTTGTGCAGGGAATGCGACATTCCGATTCACAAGGCGAACGAACACACGCAGAAACACACTCGATTTCTTCTCACTGGCGTTAAACTTTCAGCATCGTTATCGTGCTACGATGATTCATCGCATCAAACTCCATCTTCGTCGAATTCCAACTGTTCTATTGAAATCGAAAGCACAAAAGGCTACGGTGTTTCGATCGATCAACAAAGTGGTTCATTTTATGATCATTCAAATTGCAGTGTGAGCCAACAAGAAGGTGCTTCAATGGAGACCAGGAGTATTTCAGAGTATTTGATGGAAACGTTGCCCGGATGGCATGTTGATGAATTCCTCTCTGTTGATAACAAGCATAATATGATCTGA 588 46.6 MKIQCDVCHKAEAAVYCTADEASLCSDCDHRVHHANKLANRHPRFSLLHPSFKDSPRCDICQERRAFLFCKEDRAILCRECDIPIHKANEHTQKHTRFLLTGVKLSASLSCYDDSSHQTPSSSNSNCSIEIESTKGYGVSIDQQSGSFYDHSNCSVSQQEGASMETRSISEYLMETLPGWHVDEFLSVDNKHNMI 195
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00666 195 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 187 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sain12g00666 195 CDD Bbox1-BBX-like 58 100 IPR049808 -
Sain12g00666 195 Gene3D Classic Zinc Finger 1 100 - -
Sain12g00666 195 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270(InterPro)
Sain12g00666 195 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270(InterPro)
Sain12g00666 195 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Sain12g00666 195 CDD Bbox1-BBX-like 5 47 IPR049808 -
Sain12g00666 195 FunFam B-box zinc finger protein 21 1 98 - -
Sain12g00666 195 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Sain12g00666 195 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Sain12g00666 195 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00666 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138802 Sain12g00666 Sain3g00367
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:15521575 Sain9g00792 Sain-Chr9:24893311 dispersed
Sain Sain-Chr12:15521575 Sain3g00389 Sain-Chr3:9218250 wgd
Sain Sain-Chr12:15521575 Sain7g01143 Sain-Chr7:91217003 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain2g01112 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 50.518 1.78e-93 284.0
Sain3g00367 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.814 1.12e-88 264.0
Sain3g00389 . 1 224 C2C2-CO-like Transcription Factor family AT1G75540 50.22 1.02e-64 204.0
Sain3g00498 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 50.372 1.30e-124 362.0
Sain3g01907 ACH 8 355 C2C2-CO-like Transcription Factor family AT5G57660 47.884 1.91e-99 297.0
Sain3g04300 . 10 328 C2C2-CO-like Transcription Factor family AT2G47890 44.681 9.58e-95 285.0
Sain4g00581 ACH 3 403 C2C2-CO-like Transcription Factor family AT1G68520 42.308 5.55e-85 264.0
Sain4g00634 . 10 279 C2C2-CO-like Transcription Factor family AT1G68190 38.339 2.44e-63 204.0
Sain4g02078 ACH 262 331 C2C2-CO-like Transcription Factor family AT5G57660 44.286 5.87e-11 60.5
Sain4g02979 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 62.559 1.44e-85 249.0
Sain4g03051 ACH 3 170 C2C2-CO-like Transcription Factor family AT5G54470 44.253 3.80e-30 110.0
Sain5g01580 ACH 56 347 C2C2-CO-like Transcription Factor family AT3G02380 50.725 9.36e-94 282.0
Sain6g00005 . 5 222 C2C2-CO-like Transcription Factor family AT3G21150 26.087 1.74e-16 73.2
Sain6g00891 . 166 197 C2C2-CO-like Transcription Factor family AT1G75540 65.625 2.35e-07 48.5
Sain7g01143 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 46.784 4.13e-79 242.0
Sain8g00874 ACH 285 331 C2C2-CO-like Transcription Factor family AT5G57660 51.064 3.09e-09 54.7
Sain8g01998 . 4 401 C2C2-CO-like Transcription Factor family AT2G33500 39.22 2.85e-76 241.0
Sain9g00719 . 127 320 C2C2-CO-like Transcription Factor family AT3G02380 32.479 4.15e-22 93.6
Sain9g00792 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 41.618 1.34e-73 228.0
Sain9g02209 . 26 121 C2C2-CO-like Transcription Factor family AT3G21890 45.455 1.85e-25 91.3
Sain10g01390 ACH 190 270 C2C2-CO-like Transcription Factor family AT2G24790 44.444 1.37e-11 62.4
Sain10g02197 ACH 306 388 C2C2-CO-like Transcription Factor family AT5G24930 44.048 1.02e-11 64.3
Sain10g04073 ACH 4 127 C2C2-CO-like Transcription Factor family AT5G54470 51.2 5.31e-32 115.0
Sain11g00072 ACH 312 388 C2C2-CO-like Transcription Factor family AT5G24930 42.857 5.28e-10 57.8
Sain11g01916 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 53.191 7.05e-122 354.0
Sain11g03404 ACH 334 386 C2C2-CO-like Transcription Factor family AT5G24930 50.943 4.94e-11 62.0
Sain12g00115 . 154 273 C2C2-CO-like Transcription Factor family AT2G24790 30.0 1.85e-09 55.5
Sain12g00414 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 49.524 8.73e-87 259.0
Sain12g00517 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 53.528 3.53e-132 382.0
Sain12g00666 ACH 1 195 C2C2-CO-like Transcription Factor family AT1G75540 54.271 1.08e-64 201.0
Sain12g01262 . 1 75 C2C2-CO-like Transcription Factor family AT4G27310 59.211 5.81e-29 103.0
Sain13g02303 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.511 7.40e-134 386.0
Sain13g02347 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 54.088 4.20e-95 281.0
Sain13g02508 ACH 3 163 C2C2-CO-like Transcription Factor family AT4G27310 43.976 1.42e-35 123.0
Sain14g00929 ACH 315 388 C2C2-CO-like Transcription Factor family AT5G24930 41.892 1.19e-11 63.9
Sain15g00746 . 5 74 C2C2-CO-like Transcription Factor family AT2G47890 47.143 5.18e-16 68.9
Sain15g00792 . 282 338 C2C2-CO-like Transcription Factor family AT5G15850 45.614 2.47e-12 62.8
Sain15g01104 . 1 136 C2C2-CO-like Transcription Factor family AT5G48250 66.176 1.92e-58 183.0
Sain16g01025 ACH 287 399 C2C2-CO-like Transcription Factor family AT1G68520 28.319 9.78e-08 51.6
Sain16g01148 ACH 4 355 C2C2-CO-like Transcription Factor family AT5G57660 46.597 9.07e-86 262.0
Sain10001161.1g00001 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 3.39e-11 60.1
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Sain zf-B_box 1.4e-07 No_clan TF DBB