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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00680 ATGGCGAAATCCCCTGCCAACGGAAAAACCCTAAATTCCTATACCATCAAAAGCATTGACAAATCCATACGACCCGGCGATTGCGTGTTGATGAGGCCACCGGATCCATCGAAGCCGTCGTATATAGCAAAAGTGGAGAAAATTGTATCGGATAACAGAGGAAGTAATGTGAAGGTTCACATACAATGGTACTACCGGCCGGAGGAAACAACCGGCGGTCGGAAACAGTTTCACGGAACCAAAGAAGTATTTCTCTCCGATCATCATGATGTTCAGGACGCTGATACAATTGAAGGCAAGTGTAAGGTCCACACTTTCAAAAGCTATACAAAGCTCGACGCCATTGGAAACGACGATTTTTATAGTCGTTTCCAGTATTATTCTTCCACCGGAGACTTCAATCCGAATAGAATTGCTGTGTACTGCAAATGTGAGATGCCTTACAATCCTGATGACTTAATGATTCAGTGTGATGGCTGCAGTGATTGGTTTCATCCTGCTTGTATAGACATGACACTGGAGGAGGCTAAACAAATGGGACACTTCTTGTGCCAGAGTTGTTTGTCGAAAGATCATAGGATTCTCCAAAATTCTCATGCTATTTCCAGGCATGCACTCATGAAGGTAGACACAAAGCGACGTCGAACGTGA 651 44.24 MAKSPANGKTLNSYTIKSIDKSIRPGDCVLMRPPDPSKPSYIAKVEKIVSDNRGSNVKVHIQWYYRPEETTGGRKQFHGTKEVFLSDHHDVQDADTIEGKCKVHTFKSYTKLDAIGNDDFYSRFQYYSSTGDFNPNRIAVYCKCEMPYNPDDLMIQCDGCSDWFHPACIDMTLEEAKQMGHFLCQSCLSKDHRILQNSHAISRHALMKVDTKRRRT 216
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00680 216 SMART BAH-4 21 137 IPR001025 GO:0003682(InterPro)
Sain12g00680 216 SUPERFAMILY FYVE-PHD zinc finger 129 193 IPR011011 -
Sain12g00680 216 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 134 204 IPR013083 -
Sain12g00680 216 Gene3D - 2 133 IPR043151 -
Sain12g00680 216 Pfam BAH domain 23 135 IPR001025 GO:0003682(InterPro)
Sain12g00680 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682(InterPro)
Sain12g00680 216 PANTHER OS08G0421900 PROTEIN 2 206 - -
Sain12g00680 216 SMART PHD-3 141 188 IPR001965 -
Sain12g00680 216 Pfam PHD-finger 142 187 IPR019787 -
Sain12g00680 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Sain12g00680 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00680 K25868 chromatin remodeling protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
138809 Sain12g00680 Sain3g00536
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:15858207 Sain13g02205 Sain-Chr13:128418740 dispersed
Sain Sain-Chr13:77741566 Sain12g00680 Sain-Chr12:15858207 transposed
Sain Sain-Chr12:15858207 Sain3g00536 Sain-Chr3:14077905 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain3g01667 . 4 260 Alfin-like Transcription Factor family AT5G20510 71.648 3.58e-127 360.0
Sain3g02678 ACH 1 260 Alfin-like Transcription Factor family AT5G20510 72.624 1.38e-121 345.0
Sain7g02173 . 1 260 Alfin-like Transcription Factor family AT5G20510 71.756 5.09e-129 364.0
Sain8g01026 ACH 1 239 Alfin-like Transcription Factor family AT5G05610 78.333 9.40e-125 352.0
Sain11g00531 ACH 1 238 Alfin-like Transcription Factor family AT5G05610 79.832 3.34e-127 358.0
Sain12g00680 ACH 201 255 Alfin-like Transcription Factor family AT2G02470 36.364 9.15e-07 46.6
Sain12g01820 . 1 240 Alfin-like Transcription Factor family AT5G05610 78.75 2.23e-124 351.0
Sain13g00031 ACH 6 260 Alfin-like Transcription Factor family AT5G20510 71.765 1.32e-125 355.0
Sain15g00080 . 1 255 Alfin-like Transcription Factor family AT2G02470 75.194 2.58e-126 357.0
Sain10000966.1g00001 . 1 240 Alfin-like Transcription Factor family AT5G05610 77.917 1.31e-124 352.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Sain BAH 6.3e-22 No_clan TR PHD