AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00695 ATGGCGGTTGCTTCTTCTTCTCACCTTCAACTTCGATCACTTTCTTTCACCAAAGCCCTAAATCGTTCTTCAAACTCGATCACACCCAAAACCCTAATTTCCGTCAAATCCAATTCCAAAACCCTCGGAATCCGAGCAATCATATCTCAAACACCTCCACAAACCCAAAAATTCGAGCATTGTTTCACCAAAAAAGACGATGGATATTTATACTGTGAGAACCTAAAGGTTCAAGAAGTCATGGAGGCCGTTGAAAGAAGGCCATTTTATCTTTACAGTAAGCCTCAAATAACTAGAAATGTCGAGGCTTACAAGGATGCTTTAGAGGGATTGAATTCGATTATCGGCTACGCAATTAAGGCCAATAATAATTTCATGATTTTACAGCATTTGAGAAGTTTAGGTTGTGGGGCTGTTTTGGTTAGTGGCAATGAGCTTCGATTGGCTCTTCGTGCTGGTTTTGATCCCACCAGGTGTATTTTTAATGGAAATGGGAAGCTATTGGAGGATCTTGTTCTTGCTGCTCAAGAAGGTGTATTTGTTAACATAGATAGTGAATTTGATCTGGATAATATTGTATCAGCTGCAAGAATTGCTGGAAAGAAGGTCAATGTACTGCTTCGAATCAATCCGGATGTTGACCCTCAGGTCCATCCTTATGTTGCAACCGGGAATAAGAACTCCAAATTTGGTATAAGAAACGAGAAGTTGCAATGGTTTCTAGATGCTGTGAAGTCGTATCCTGATGAACTTAAGCTAGTTGGGGCGCATTGCCATCTTGGATCCACCATTACCAAGGTTGACATATTCAGGGACGCTGCAGCGATTATGGTGAAGTTTATTGACGAAATTCGAGCCCAAGGTTTTGATATTAATTACTTGAACATTGGAGGTGGTCTTGGGATCGATTATTATCATGCTGGCACCATACTTCCTACACCCAGAGATCTCATCGACACAGTCCGGGAGCTAGTCTTGTCTCGAAACCTTAATCTCATTATCGAACCCGGGAGGTCCCTGATTGCGAATACTTGCTGCTTTGTTAATCGTGTCACTGGTGTAAAAACAAATGGCACGAAAAACTTTATTGTGATCGATGGCAGCATGGCTGAACTTATCCGTCCTAGCCTATATGATGCTTATCAACACATAGAACTGGTTTCTCCGCCACCACCCGATTCTGCGGTTTCGACTTTTGATGTCGTGGGCCCGGTTTGTGAGTCGGCCGATTTTTTGGGGAAAAATAGGGAACTTCAAGCTCCAGCCAGGGATTCTGGGCTTGTAGTTCATGATGCCGGTGCCTACTGCATGAGCATGGCTTCAACTTACAACCTCAAGATGCGCCCACCGGAATACTGGGTTGAAGAAGATGGATCAGTAGCCAAAATCAGGCATGGGGAGACTTTTGAAGATCATATGAGATACTTTGAGGGACTCTCAATCTAA 1446 43.15 MAVASSSHLQLRSLSFTKALNRSSNSITPKTLISVKSNSKTLGIRAIISQTPPQTQKFEHCFTKKDDGYLYCENLKVQEVMEAVERRPFYLYSKPQITRNVEAYKDALEGLNSIIGYAIKANNNFMILQHLRSLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAAAIMVKFIDEIRAQGFDINYLNIGGGLGIDYYHAGTILPTPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPPDSAVSTFDVVGPVCESADFLGKNRELQAPARDSGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVAKIRHGETFEDHMRYFEGLSI 481
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00695 481 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 117 135 IPR022653 -
Sain12g00695 481 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 286 301 IPR022657 -
Sain12g00695 481 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 87 473 IPR009006 GO:0003824(InterPro)
Sain12g00695 481 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 250 263 IPR000183 GO:0003824(InterPro)
Sain12g00695 481 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 433 446 IPR000183 GO:0003824(InterPro)
Sain12g00695 481 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 117 135 IPR000183 GO:0003824(InterPro)
Sain12g00695 481 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 332 351 IPR000183 GO:0003824(InterPro)
Sain12g00695 481 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 137 149 IPR000183 GO:0003824(InterPro)
Sain12g00695 481 CDD PLPDE-III-DapDC 88 454 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Sain12g00695 481 Hamap Diaminopimelate decarboxylase [lysA]. 74 477 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Sain12g00695 481 PRINTS Diaminopimelate decarboxylase signature 135 152 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Sain12g00695 481 PRINTS Diaminopimelate decarboxylase signature 443 465 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Sain12g00695 481 PRINTS Diaminopimelate decarboxylase signature 360 378 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Sain12g00695 481 PRINTS Diaminopimelate decarboxylase signature 223 232 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Sain12g00695 481 Gene3D Alanine racemase 94 339 IPR029066 -
Sain12g00695 481 FunFam Diaminopimelate decarboxylase 94 339 - -
Sain12g00695 481 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 96 342 IPR022644 GO:0003824(InterPro)
Sain12g00695 481 PANTHER DIAMINOPIMELATE DECARBOXYLASE 54 475 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Sain12g00695 481 NCBIfam diaminopimelate decarboxylase 64 474 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Sain12g00695 481 SUPERFAMILY PLP-binding barrel 87 343 IPR029066 -
Sain12g00695 481 FunFam Diaminopimelate decarboxylase 330 473 - -
Sain12g00695 481 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 343 433 IPR022643 GO:0003824(InterPro)
Sain12g00695 481 SUPERFAMILY Alanine racemase C-terminal domain-like 317 474 IPR009006 GO:0003824(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00695 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:16133133 Sain1g00754 Sain-Chr1:55930408 dispersed