AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00706 | ATGGCAAAAGCTTCACTTGCATTTCTTCTACTCCTCTTCATTCTTGCTATCTCAGAATTCACAACGGTGAAGGGAAAAATTTGTGAAAAGCCTAGCAAGACTTGGTTTGGAGCATGTCAAGACACAAATAAGTGTGACAAACAATGCATAGAATGGGAGGACGGAAAGCATGGAGCTTGTCACGAACGTGAAAATAAGTACATGTGTTTTTGCTACTTCGATTGTGGTTCTAAATCACCGGCACCTCCAGGAACTCCACCACCAGCTGATGGCGGATCACCACCACCACCAGCTGACGGCGGTGCACCACCACCACCAGCTGACGGTGGAGCACCACCTCCACCAGCTGACGGCGGAGCACCACCACCTCCTGCTTAA | 378 | 49.47 | MAKASLAFLLLLFILAISEFTTVKGKICEKPSKTWFGACQDTNKCDKQCIEWEDGKHGACHERENKYMCFCYFDCGSKSPAPPGTPPPADGGSPPPPADGGAPPPPADGGAPPPPADGGAPPPPA | 125 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00706 | 125 | SUPERFAMILY | Scorpion toxin-like | 26 | 75 | IPR036574 | - | |
| Sain12g00706 | 125 | Gene3D | - | 27 | 75 | IPR036574 | - | |
| Sain12g00706 | 125 | PANTHER | DEFENSIN-LIKE PROTEIN 1 | 1 | 75 | - | GO:0006952(PANTHER) | |
| Sain12g00706 | 125 | SMART | gth-4 | 27 | 75 | IPR003614 | GO:0006952(InterPro) | |
| Sain12g00706 | 125 | Pfam | Gamma-thionin family | 26 | 75 | - | - | |
| Sain12g00706 | 125 | ProSitePatterns | Gamma-thionins family signature. | 26 | 49 | IPR008176 | GO:0006952(InterPro) | |
| Sain12g00706 | 125 | MobiDBLite | consensus disorder prediction | 81 | 125 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00706 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:16492050 | Sain4g00784 | Sain-Chr4:21920340 | dispersed | |
| Sain | Sain-Chr12:16492050 | Sain12g00707 | Sain-Chr12:16525624 | tandem |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Sain4g00784 | . | 1 | 77 | Plant Defensins gene family | AT1G19610 | 50.649 | 2.21e-25 | 89.7 | |
| Sain4g00882 | . | 1 | 77 | Plant Defensins gene family | AT2G02100 | 64.935 | 6.02e-32 | 104.0 | |
| Sain8g00213 | . | 11 | 76 | Plant Defensins gene family | AT1G61070 | 39.394 | 6.55e-12 | 53.5 | |
| Sain8g00214 | . | 4 | 73 | Plant Defensins gene family | AT5G63660 | 34.722 | 8.11e-11 | 50.8 | |
| Sain10g00256 | . | 1 | 73 | Plant Defensins gene family | AT5G63660 | 53.425 | 3.74e-23 | 82.0 | |
| Sain10g00260 | . | 1 | 73 | Plant Defensins gene family | AT5G63660 | 58.904 | 2.02e-24 | 85.1 | |
| Sain10g02950 | . | 26 | 77 | Plant Defensins gene family | AT2G02130 | 65.385 | 8.47e-21 | 76.6 | |
| Sain12g00700 | . | 5 | 77 | Plant Defensins gene family | AT1G19610 | 50.685 | 1.00e-23 | 85.5 | |
| Sain12g00704 | . | 1 | 78 | Plant Defensins gene family | AT1G19610 | 36.585 | 1.65e-13 | 60.1 | |
| Sain12g00705 | . | 4 | 78 | Plant Defensins gene family | AT1G19610 | 43.038 | 2.26e-11 | 55.1 | |
| Sain12g00706 | . | 8 | 78 | Plant Defensins gene family | AT1G19610 | 49.296 | 2.58e-21 | 79.3 | |
| Sain12g00707 | . | 29 | 78 | Plant Defensins gene family | AT1G19610 | 52.83 | 1.84e-07 | 47.8 | |
| Sain12g00708 | . | 1 | 77 | Plant Defensins gene family | AT1G19610 | 53.247 | 1.13e-26 | 92.8 |