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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00714 ATGGCATCTAGCTCAATGTCTTCACGTGGATCAGGTTCATGGACTGACAAACAGAACAAGGCCTTCGAAAAGGCGCTCGCTGTGTTTGACAAAGATACCCCTGACCGCTGGCACAATGTCGCCAAGGCCGTTCCTGGGAAAACCGCACAGGAAGTGGAGAGGCATTTTGAACTACTTGTGGAAGATATCAACAGCATCGAGAGTGGCCGAGTTCCTTTCCCCAAATACAGGACTACTAAAGGGCATCATAACTAA 255 49.02 MASSSMSSRGSGSWTDKQNKAFEKALAVFDKDTPDRWHNVAKAVPGKTAQEVERHFELLVEDINSIESGRVPFPKYRTTKGHHN 84
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00714 84 ProSiteProfiles Myb-like domain profile. 6 60 IPR001005 -
Sain12g00714 84 SUPERFAMILY Homeodomain-like 13 67 IPR009057 -
Sain12g00714 84 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 82 IPR044636 GO:0003700(InterPro)
Sain12g00714 84 FunFam Transcription factor SRM1 6 73 - -
Sain12g00714 84 SMART sant 10 62 IPR001005 -
Sain12g00714 84 Gene3D - 4 73 - -
Sain12g00714 84 Pfam Myb-like DNA-binding domain 12 56 IPR001005 -
Sain12g00714 84 ProSiteProfiles SANT domain profile. 9 64 IPR017884 -
Sain12g00714 84 CDD SANT 14 60 IPR001005 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00714 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:16823540 Sain8g02922 Sain-Chr8:176697584 dispersed
Sain Sain-Chr12:16823540 Sain7g01104 Sain-Chr7:89051461 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Sain None None None TF MYB-related