Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00719 | ATGATACGAGCGGTGATAGTAATGAACGACCAAGGCAAGCCTCGCCTTGTCAAATTCTACGAGCATCAGCCCGTGGAGAAACAACAAGAAATCATTCGGAGCATATACGGAGTTCTATGCAGTAGAGCGGAGAATGTGAGCAACTTTGTTCAAGCAGAATCAAGTTTTGGACCGGATACCAGACTTGTATACAAGACATTTGCTACACTCTACTTCATTGTCATATTTGATGATTCTGAAAATGAGCTTGCCATTCTTGATCTTATGCAAGTATTTGTGGAGACGTTGGACAAGTGTTTCAGTAATGTTTGTGAGCTTGATATAGTGTTCAATTTCAACAAGGTACATACCATCCTGGATGAGATTATTTTGGGAGGTCAAGTTATTGAAATGAGTTCTTCTGAAGTTGTAAAGGCAGTAGACGGCATATCATGGCTGGAGAAGAACCCAAATTCAATCCTTCGAGTTCCAAAATCAATATCTGGTTGGCAGGGACGATAA | 501 | 40.72 | MIRAVIVMNDQGKPRLVKFYEHQPVEKQQEIIRSIYGVLCSRAENVSNFVQAESSFGPDTRLVYKTFATLYFIVIFDDSENELAILDLMQVFVETLDKCFSNVCELDIVFNFNKVHTILDEIILGGQVIEMSSSEVVKAVDGISWLEKNPNSILRVPKSISGWQGR | 166 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00719 | 166 | PIRSF | AP-complex-sigma | 1 | 155 | IPR016635 | GO:0015031(InterPro) | |
| Sain12g00719 | 166 | ProSitePatterns | Clathrin adaptor complexes small chain signature. | 62 | 72 | IPR000804 | GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro) | |
| Sain12g00719 | 166 | Pfam | Clathrin adaptor complex small chain | 1 | 141 | IPR022775 | - | |
| Sain12g00719 | 166 | Gene3D | - | 1 | 158 | - | - | |
| Sain12g00719 | 166 | PANTHER | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY | 2 | 143 | IPR016635 | GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER) | |
| Sain12g00719 | 166 | SUPERFAMILY | SNARE-like | 1 | 142 | IPR011012 | - | |
| Sain12g00719 | 166 | CDD | AP3-sigma | 1 | 144 | IPR027155 | GO:0006896(InterPro)|GO:0030123(InterPro) | |
| Sain12g00719 | 166 | FunFam | AP complex subunit sigma | 1 | 156 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00719 | K12399 | AP-3 complex subunit sigma |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:17072424 | Sain8g02909 | Sain-Chr8:176272884 | dispersed |