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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00720 ATGGCCACCATCTTAGCTCGCAAGTCTATCTCCGCTCTTCGTTATCGAAATCTTGTTGTGGCAGGACAAGCCTTGCAGGGCCCTAATATCCTTGGGACAATTTCTGGTGCACGCTCATTTGCAACCAAGCACTCATTTTCAACTGATAAAGATGATGAAGAAAGAGAAAAGCTTGCAAGGGAAATATCAAAAGACTGGAGTTCTGTTTTCGAGCGGAGCATTAATACCTTATTTCTAACTGAATTAGTTCGAGGGCTGTCGCTGACTCTCAAATACTTCTTTGAGCCAAAAGTTACTATCAATTATCCATTTGAGAAGGGTCCTTTAAGCCCTCGTTTTCGAGGTGAACATGCCCTCCGACGTTATCCAACTGGAGAGGAGCGTTGTATTGCCTGTAAACTTTGTGAAGCTATTTGCCCAGCTCAAGCTATCACCATAGAAGCAGAGGAACGAGAAGATGGCAGCCGCAGAACAACAAGGTACGACATTGATATGACAAAGTGTATATACTGTGGATTTTGCCAAGAAGCATGCCCGGTTGATGCAATTGTAGAAGGCCCCAACTTTGAGTTCGCTACTGAAACTCACGAGGAACTTCTATATGATAAGGAGAAGCTGCTTGAAAATGGGGATCGGTGGGAAACTGAGATTGCCGAGAATCTTAGATCTGAGAGCCTCTATCGGTAA 687 44.25 MATILARKSISALRYRNLVVAGQALQGPNILGTISGARSFATKHSFSTDKDDEEREKLAREISKDWSSVFERSINTLFLTELVRGLSLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 228
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00720 228 FunFam NADH-quinone oxidoreductase subunit I 1 102 225 - -
Sain12g00720 228 Pfam 4Fe-4S dicluster domain 128 182 IPR017896 -
Sain12g00720 228 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 76 212 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Sain12g00720 228 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 61 228 IPR010226 GO:0003954(PANTHER)|GO:0005747(PANTHER)|GO:0006120(PANTHER)|GO:0009060(PANTHER)|GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0032981(PANTHER)|GO:0045272(PANTHER)|GO:0051539(InterPro)
Sain12g00720 228 Gene3D - 102 227 - -
Sain12g00720 228 NCBIfam NADH-quinone oxidoreductase, chain I 85 206 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Sain12g00720 228 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 120 149 IPR017896 -
Sain12g00720 228 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 129 140 IPR017900 -
Sain12g00720 228 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 168 179 IPR017900 -
Sain12g00720 228 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 159 188 IPR017896 -
Sain12g00720 228 SUPERFAMILY 4Fe-4S ferredoxins 102 212 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00720 K03941 NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2]
Sain12g00720 K00338 NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
138824 Sain12g00720 Sain13g02142
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:17080591 Sain13g02142 Sain-Chr13:126524469 wgd