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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00748 ATGGATAGCATCGTAGACGCTTTGGACAACGCTTATCAAGAATTTGTGAGTGCCGTAGCTAGCACACTGGAAGCCAAGGAGGCCTCCGGTGGGCAGGTTACCGTTGCCACAGATGCTGCCCTAGAGAACCTTAAGCAGAGGTGGGAATTGTTTCGAGTAGCCTGTGATCAGGCTGAGGAGTTTCTAGAATCTGTGAAACTAAGAATAGCTTCTGAATGCCTGGTGGATGAGGCCACTGGTTCAGTTGTTGGGAAGCCGGTCACACCTGGGCTCCCACCTATTAGTGCCGTGCGGTTGGAACAGATGAGTAAAGCGGTCCGCTGGCTAGTAATTGAACTTCAACAAGGTTCGGGATCTGCAGCCAACCTATCAACTCCTAATCACACTTCTGCACCTTTTGATGCTCGGTTTCATGAAGACTCGACTCAATAG 432 50.23 MDSIVDALDNAYQEFVSAVASTLEAKEASGGQVTVATDAALENLKQRWELFRVACDQAEEFLESVKLRIASECLVDEATGSVVGKPVTPGLPPISAVRLEQMSKAVRWLVIELQQGSGSAANLSTPNHTSAPFDARFHEDSTQ 143
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00748 143 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32 1 143 IPR033244 GO:0006355(InterPro)|GO:0009631(InterPro)|GO:0010150(InterPro)|GO:0016592(InterPro)|GO:0048364(InterPro)
Sain12g00748 143 MobiDBLite consensus disorder prediction 119 143 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00748 K27471 mediator of RNA polymerase II transcription subunit 32
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:17959319 Sain16g00575 Sain-Chr16:13085537 dispersed