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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00768 ATGAAATTCAATGAAATTTCCCATTTTAGCCACCCTCAACACCGGCTCAAGCCATGCTACACCGAGGTCCCATTCAAGTGCGATGGTTGCAAGGAAGTTGGCATAGGGTCCAACTACAAATGCACGACATGCAACTATGACTTGCACGCACACTGTGCCCTCCCGTCCTCTTCCATCATCCACCCTTTCTACACCAAGTGTTCCTTTCAGTTCCTCGCCCGTCCACCGGGCCCCATAGCCCGTTACTGCAACGCCTGTGAGAAGGCGGTGTCAGGGTTCGTTTACCACTGTAAGTTGTGCGGGTTTGACCTCCACCCCTGTTGTGCCAAACTTCCAACTATGTTGGATGACGGTGAGGTGGAGTTGTACCTTTACAGAAAGGTGGGGTCCGCCTGCCACAGATGTGGTAGGAAGGGACGAAGCTGGAGTTACAGGTCAACGTGCAAGAAGTATAACTTGCACGTGGCCTGTGTGAAGGAGATGTTGGTGGAGAATTGGCATGAGTTGTATTTTGGTGGTGGGGTTGGGGTGAATGGTAATTTTAGTGGTGATTTGTATGGGCAAAATAGGAAAGTGGAGACAAGAATTCCAAGCTTGAAGGGTACATTGGAAAGCTATCATCAAAATCATCAAAGCAAAGGGAAAGTGAAAAAGTGTTGTGAGATGGCTGGTTTGGCAATGCAATTTGTGATATCTGCAGTTCTTGGTGATCCCACCACTCTAATTGCTGGTGTTGTTGGTGCTTTCATGTCTAAGTAG 759 48.35 MKFNEISHFSHPQHRLKPCYTEVPFKCDGCKEVGIGSNYKCTTCNYDLHAHCALPSSSIIHPFYTKCSFQFLARPPGPIARYCNACEKAVSGFVYHCKLCGFDLHPCCAKLPTMLDDGEVELYLYRKVGSACHRCGRKGRSWSYRSTCKKYNLHVACVKEMLVENWHELYFGGGVGVNGNFSGDLYGQNRKVETRIPSLKGTLESYHQNHQSKGKVKKCCEMAGLAMQFVISAVLGDPTTLIAGVVGAFMSK 252
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00768 252 SUPERFAMILY Cysteine-rich domain 30 114 IPR046349 -
Sain12g00768 252 PANTHER CYSTEINE-HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 2 249 - -
Sain12g00768 252 Gene3D - 12 58 - -
Sain12g00768 252 Pfam C1 domain 74 109 IPR004146 -
Sain12g00768 252 Pfam C1 domain 9 53 IPR004146 -
Sain12g00768 252 ProSiteProfiles Zinc finger phorbol-ester-DAG-type profile. 13 67 IPR002219 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00768 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138829 Sain12g00768 Sain3g00607
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:18663228 Sain3g00607 Sain-Chr3:16863875 wgd