AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00775 ATGATGAAGGGAGTAAAGAACTACCTGAGGATGCCGACTGATCCAACTATATCAGAAGCATCATCCAAGTTGATCAATTCAGATTTGAAAGACATTGGAGATGCCACCAAGAAACTCGCTAATCATGTCATCAAGCTCGGAGTCAGAGGTGGTTTGATTACTACCGTCCTTCAATGGTTCGCCTGCGGTGCCGCCGTTTATTTGCTGATACTAGATCGAACAAACTGGAGGACAAACATGCTTACTTCACTCTTGGTCCCTTACATCTTCTTGACTTTTCCTAATTGGCTCTTCGGAATTTTGAGAGGAGACATCGGGAAATGGATTACCGTCGTCGGAGTCATATTGCGTCTCTTCTTCCATAAGCACTTTCCAGATTATTTGGAGTTACCTGGAGCTGTGCTCCTTCTGGTAGTGGTATCCCCGAGCTTCTTGGCTGGGTATGTACGATTAGGGTGGATAGGTGTGATTATCTGTCTAGTTATCGGATGCTACCTTCTCCAAGAACACATCAGAGCTTCTGGAGGTTTCAGGAATGCATTCACGAAGAGCAACGGCATTTCCAACACGATCGGTATCGTCCTCTTGTTCGTCTTCCCCGTCTGGGCTTTGATCGGCTTAATATTTTAG 630 45.56 MMKGVKNYLRMPTDPTISEASSKLINSDLKDIGDATKKLANHVIKLGVRGGLITTVLQWFACGAAVYLLILDRTNWRTNMLTSLLVPYIFLTFPNWLFGILRGDIGKWITVVGVILRLFFHKHFPDYLELPGAVLLLVVVSPSFLAGYVRLGWIGVIICLVIGCYLLQEHIRASGGFRNAFTKSNGISNTIGIVLLFVFPVWALIGLIF 209
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00775 209 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 11 204 IPR008892 GO:0016020(InterPro)
Sain12g00775 209 Pfam Cold acclimation protein WCOR413 19 196 IPR008892 GO:0016020(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00775 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:18874928 Sain5g01525 Sain-Chr5:85666579 wgd