AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00798 ATGGAGACGTTACAGGATCTGATCGAAGAAGCAAAGCTTCGTACTGTGTGGTGGGCCGTTTGTATTTTCGGTATCACTTACTTCTTAACCCACACCAGTAAATCAATGTGGATGAATGTTCCTATAGCAGTTTTTCTGGTATCAGGGGTTCATATTTTGTTAAACGAAGTGGATTTCCATTGGAAGATCAGGAAACCCCGTGGAAATTCATATTTGGCACACCTTGAGAAAAAACAAATGTCTGTAAATGATTCTCGTCTTTCCACGTTGCCTCCCCTGCCTAAATGGAAGAGGAAGATTGATTCTCCAGTAGTTGAGGCTGCTATGGAGGATTTTGTTAACAAACTTATGCAAGAATTTGTGGTTGATCTGTGGTATTCCGATATAACGCCTGACAAGGAAGCACCACAGCTGATTCATGCAGTTCTTATGGATATTCTTGCCGAAATCTCCACAAGAGTCAAAGACATAAACCTAGTTGACATGCTAACAAGGGATGTGGTTGATCTAGTAGGGGATCATCTAGAGCTTTTCAGGAAAAACCAAGCTGCTATTGGCAGGGAGGTTATGGTGACATTGTCTTCTGAAGAAAGAGATGAAAGGTTGAAACACCATCTCATGACTTCTAAGGAGCTTCATCCAGCTTTGATATCACCCGAGAGTGAGTACAAGTTTCTTAAGCGGATTATGGGGGCAATTTTGGCTGCAGTGCTTAGACCACGAGAAGCTCAATGCCCTTTAGTTCGATGCATTGCAAGGGAGCTTATAACATGCTTGGTAATGGAACCTGTAATGAGATTTGCAAGCCCTGGGCATATCAATGAGTTGATCGAGGTTATTTTCTTAGCAAATAATAACAATGGAGGGAAAGAGGGAGGTGATGATCAGTCAACTAATGTCGTGGGTCAAACTCAAACCCAGAATCAGTCTGCTGCTACAAACGTTGTCAAACCTCCAGAGTCTGCTTCTGTGAAAAGTGGCTCTTCGGGTGATCAAAAGAGTGGTCAAACATTGTCTACACCTAACAACCAAAAAGAAGCAGTTGTAAATCCATCTGGTGCAATCGTTAGTGGGCCCGTTCAAGATGAACCGTTGCAGGCACGGACCTCTGATTGGGCTCGGGTTCTTGAGGCAGCTACCCAGAGAAGGACAGAAGTTCTCCAGCCAGAAAATCTTGAAAATATGTGGACCAGAGGTAGAAACTATAAGAAGAAAGCTCAGAAGAATGTTGCTCCAGGACTTCAACCACCTATCATAAATAGTCCACGAATAAGCAACAGAAAAGATCCTGGGAAGGAAATATCACCCCATAAACCCGAGACTTGGCAGACCCCCCCGGAGCGTCATGCGGTTGATCAACAAAAAGACCCATTTGTTGATGCTGAAGTTTTGTGTGATCAAAGCAAGACACAAGCTCCTTGTGATTTAGATAATGAAAATTCTAATGGAAGTAAAAGATCAAATAGCATATCTGATTTGAACATTCAAACCCAGCCAGAAACTAAGTCTCCAATCCAAGTTGGTGGATCAATTATATCGGAGTTCTATAGTGCGAATGCTGGGAGAGATAGTGATGCACTTAATGTTAATACTGCTTCTGATAAAGGACCGCGCACTGAAGGATATGTTCCCAAGCTCAAGTGTCGAGTTCTAGGAGCATACTTTGAGAATCTTGATTCAAAATCATTTGCAGTCTATTCTATTGCAGTGACGGATGCTGGTAACAAGACTTGGTTTGTGAAAAGAAGATACAGGAATTTTGAGAGATTACACCGCCATCTTAAGGACATTCCGAATTATACATTACATTTGCCACCTAAAAGGATACTCTCGTCTAGCACAGAGGATGCATTTGTTCATCAACGGTGTATACAGCTTGATAAATATCTTCAAGATCTTTTGTCTATAGCTAATATCGCTGAGCAACATGAAGTATGGGACTTCTTGAGCATGAATTCAAAGAGTTACTCTTTTGGAAGGTCATCATCGATGGTGAGAACTTTAGCAGTGAATGTGGACGATGCTGTGGATGATATTGTACGCCAGTTTAAAGGAGTTTCAGATGGCTTAATGCGGAAAGTTGTTGGCCCTTTGTCCCCTTCTGGAGCTTCTGCTTCAGCTGCAAACAGAACCGTGCCATGGAAAGCTGATGAACCATTTGATTCAGTGTCAAAGCAAAGTACCTTGGACACGACTAACAATCTTTCCGATAACGAGGAAGGTGAGAAATATGTGACACCTCGCAGTCACGAAATGGAGTCTGCTGCACAAGTTAATGGGCAGAATTTGGACAATGAGTTGAACTCAAAAGGATTTCCACCCAAGGTTCTCAAAAGTGATGAACTGAATAGAAGCTTGGAATTGGACAAAAAAAGTACTTCAGAGGTGCGATCTGAAATACTCAGCCTGGCTGCAAATTTTCCTTCAACTCCTGGCCTAAAGGAAGATCCACTTGGTGTGCCAGCAGAGTGGACCCCAACTAATGTAAGTGTTCCATTGCTAAATTTGGTAGACAAGATATTTCAACTCAACAGAAGAGGCTGGTTAAGACGACAAGCGTTTTGGATATCAAAGCAAATTTTGCAGCTAATGATGGAGGATGCTATTGATGACTGGCTCATAAGGCAAATTCATTTTCTCAGAAGAGACGACATTGTTGCTCAAGGGATTCATTGGATCCAAGATGTTCTGTGGCCTGAAGGTATATTCTTTCTGAAAGTAAATAAAATTCAAACGGATTCTTCTCAACCAAACGAAGGATCTTCTCGGACTACATCCGGCAGTAAGGGTAATAAACAAGCGTCATTCGAGGAGCAACTTGAGGCTGCTCGTAGAGCTAGCGATATCAAGAAGATGATATTCAAGGGAGCACCAACTACATTGGTCAGCTTGATCGGACATAAGCAATACAAACGATGTGCTAAAGACGTATATTATTTTCTCCAGTCTGCTGTGTGTTTGAAGCAACTTGGGTATGGTTTACTTGAACTTGCAGTAATAACGATTTTCCCGGAGCTGCAAGATGTCATATCAAATGTTCATGAGAAGAGAAAATCCGAGCCGGTGTAG 3069 42.13 METLQDLIEEAKLRTVWWAVCIFGITYFLTHTSKSMWMNVPIAVFLVSGVHILLNEVDFHWKIRKPRGNSYLAHLEKKQMSVNDSRLSTLPPLPKWKRKIDSPVVEAAMEDFVNKLMQEFVVDLWYSDITPDKEAPQLIHAVLMDILAEISTRVKDINLVDMLTRDVVDLVGDHLELFRKNQAAIGREVMVTLSSEERDERLKHHLMTSKELHPALISPESEYKFLKRIMGAILAAVLRPREAQCPLVRCIARELITCLVMEPVMRFASPGHINELIEVIFLANNNNGGKEGGDDQSTNVVGQTQTQNQSAATNVVKPPESASVKSGSSGDQKSGQTLSTPNNQKEAVVNPSGAIVSGPVQDEPLQARTSDWARVLEAATQRRTEVLQPENLENMWTRGRNYKKKAQKNVAPGLQPPIINSPRISNRKDPGKEISPHKPETWQTPPERHAVDQQKDPFVDAEVLCDQSKTQAPCDLDNENSNGSKRSNSISDLNIQTQPETKSPIQVGGSIISEFYSANAGRDSDALNVNTASDKGPRTEGYVPKLKCRVLGAYFENLDSKSFAVYSIAVTDAGNKTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRILSSSTEDAFVHQRCIQLDKYLQDLLSIANIAEQHEVWDFLSMNSKSYSFGRSSSMVRTLAVNVDDAVDDIVRQFKGVSDGLMRKVVGPLSPSGASASAANRTVPWKADEPFDSVSKQSTLDTTNNLSDNEEGEKYVTPRSHEMESAAQVNGQNLDNELNSKGFPPKVLKSDELNRSLELDKKSTSEVRSEILSLAANFPSTPGLKEDPLGVPAEWTPTNVSVPLLNLVDKIFQLNRRGWLRRQAFWISKQILQLMMEDAIDDWLIRQIHFLRRDDIVAQGIHWIQDVLWPEGIFFLKVNKIQTDSSQPNEGSSRTTSGSKGNKQASFEEQLEAARRASDIKKMIFKGAPTTLVSLIGHKQYKRCAKDVYYFLQSAVCLKQLGYGLLELAVITIFPELQDVISNVHEKRKSEPV 1022
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00798 1022 Pfam PXA domain 102 278 IPR003114 -
Sain12g00798 1022 Gene3D - 547 660 IPR036871 GO:0035091(InterPro)
Sain12g00798 1022 Pfam PX domain 574 650 IPR001683 GO:0035091(InterPro)
Sain12g00798 1022 SUPERFAMILY PX domain 546 653 IPR036871 GO:0035091(InterPro)
Sain12g00798 1022 Pfam Sorting nexin C terminal 848 983 IPR013937 -
Sain12g00798 1022 ProSiteProfiles PXA domain profile. 102 285 IPR003114 -
Sain12g00798 1022 SMART PX-2 542 652 IPR001683 GO:0035091(InterPro)
Sain12g00798 1022 MobiDBLite consensus disorder prediction 469 506 - -
Sain12g00798 1022 MobiDBLite consensus disorder prediction 289 345 - -
Sain12g00798 1022 ProSiteProfiles PX domain profile. 544 656 IPR001683 GO:0035091(InterPro)
Sain12g00798 1022 SMART PXA-3 102 285 IPR003114 -
Sain12g00798 1022 MobiDBLite consensus disorder prediction 405 452 - -
Sain12g00798 1022 MobiDBLite consensus disorder prediction 721 740 - -
Sain12g00798 1022 MobiDBLite consensus disorder prediction 717 748 - -
Sain12g00798 1022 MobiDBLite consensus disorder prediction 471 506 - -
Sain12g00798 1022 MobiDBLite consensus disorder prediction 288 345 - -
Sain12g00798 1022 MobiDBLite consensus disorder prediction 912 934 - -
Sain12g00798 1022 MobiDBLite consensus disorder prediction 426 452 - -
Sain12g00798 1022 PANTHER PX SERINE-THREONINE KINASE PXK 3 1017 IPR051837 -
Sain12g00798 1022 CDD PX-SNX19-like-plant 546 652 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00798 K17925 sorting nexin-13
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Event-related genes

Select Gene_1 Gene_2 Event_name
138831 Sain12g00798 Sain3g00617
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:19668399 Sain7g02026 Sain-Chr7:121224364 dispersed
Sain Sain-Chr12:19668399 Sain3g00617 Sain-Chr3:17445356 wgd