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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00799 ATGATGATAATATCAGTGCCTTGTCAATCTCCGTGTCTTCACCGTTCGCCATTAGCAGCTCCCTCCACAACCACAACCACAACCATATGTTGTTCTTCCAGAAATAATGCTTATATACCTAAACTTGAACCCTTTAGCCGAAGCAGGCTCGATAGACTCGTTAAGGATCCTCCATTGATCCAGAAATCCGAAAACGATCTCTCAGATTACTGTTCAACGTTGGAAGGAGATCCATCCTACAGCTGTTGGAGAGCCTATTTTGAGCTTAAAGATCTGGAAAAAGAAGCGCCAAAGGAAGTGGTGGAGAGGGTGATACTGGAATCGGGAGGGGTGAAATCTTTGATTGGATGCTTACACGGAATCTCCGAAATTCACAAGGCATCCAAGGGATCATCATCAAATTCAAAGTTGGAGAATTCGAATGTCGCAGCAGCAGCAGTTGGAGGAGAGAGAGCATGTCCGATCCCAGACGGAGTACCGAAGAGCCGGGAAGAGATGGAGGAAGAAGAGAAAGGGAAGATGCCGGACTCCCCTTTCACCAGATTGCTTCGCTCTAAAGGAAGCCTTCCTGCTTGGTTTTCGGCTGCCCCTGATCATTAA 600 47.0 MMIISVPCQSPCLHRSPLAAPSTTTTTTICCSSRNNAYIPKLEPFSRSRLDRLVKDPPLIQKSENDLSDYCSTLEGDPSYSCWRAYFELKDLEKEAPKEVVERVILESGGVKSLIGCLHGISEIHKASKGSSSNSKLENSNVAAAAVGGERACPIPDGVPKSREEMEEEEKGKMPDSPFTRLLRSKGSLPAWFSAAPDH 199
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00799 199 PANTHER CCG-BINDING PROTEIN 1 19 199 IPR037502 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0010183(InterPro)|GO:0036033(PANTHER)|GO:0036033(InterPro)
Sain12g00799 199 MobiDBLite consensus disorder prediction 157 177 - -
Sain12g00799 199 MobiDBLite consensus disorder prediction 148 182 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00799 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138832 Sain12g00799 Sain3g00618
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:19674527 Sain3g00618 Sain-Chr3:17476174 wgd