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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00803 ATGGGGGGCTTAAATCCGTCTCCTGAACTAAGCTTGGATCTCAAACCAAGTTTTATCCCCAAAACCATCACTCAATTTCTTGGTGGAATGTCGAGAATCGGTAGCGTAACCGAGAAGGTATTGCAGGTTGATGATTTCGTTGACCGGTTAGAAACCGAAACAAGGAAAATCGAAGCATTCAAACGAGAACTCCCTTTATGCATGCTCCTCATCAATGATGCAATTGTTGCATTGAAAGAGGTTTCAATGGTGTTAAAGAAATCATCAAATGCTGAGCCTGTACTTGAAGAATTTATACCACTCAAGAACAATTGTGATGATGATGATGCAAAAGTTGAAATCATCATAAAAAAGGACAGTGGTGATAAAAAGAATTGGTTGAGCTCCACACAGCTTTGGAACACCAATGAGAACATCGTTCAGAAAGCAAATACAACAATTAAAAAGAGAGATGAGGAAGAAGATCATGGGAAAACATTTTTCTTTCCTGAAATCAAGAATCCAATGAGGGAAAATGGTTTGCTTACTGAAATCAATGGTGAAAGTAGATTGACACCAAATGTTCGATTAAACATACAGAGTGGCGGCACCGCCACTCTACCGCCACAGCTGCAGACATCTAGGAAACAAAGAAGATGCTGGTCCACGGAGTTGCATAGACGATTTGTCAATGCATTGCAACAACTTGGTGGCTCACAAGCCACCCCTAAGCAGATTCGAGAGCTTATGCAAGTAGATGGTCTAACGAACGATGAAGTGAAGAGCCATTTGCAAAAATACAGGCTTCATACACGAAGGCTTCCATCTTCAAACACAAATCAATCAGGTGTTGTTTTGGATGGCGGTTTATGGATGCCGCCATATGTTGGATCCTCCAAATGTAGCGATTCTCAATCGGGTTCTCCTGATGGCCCCCTCCCAAATGGGGGCGACACCGAAGATGAGAAATCTGAGAATTATTGCTGGAATGGTAATCTTTAA 981 41.79 MGGLNPSPELSLDLKPSFIPKTITQFLGGMSRIGSVTEKVLQVDDFVDRLETETRKIEAFKRELPLCMLLINDAIVALKEVSMVLKKSSNAEPVLEEFIPLKNNCDDDDAKVEIIIKKDSGDKKNWLSSTQLWNTNENIVQKANTTIKKRDEEEDHGKTFFFPEIKNPMRENGLLTEINGESRLTPNVRLNIQSGGTATLPPQLQTSRKQRRCWSTELHRRFVNALQQLGGSQATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRLPSSNTNQSGVVLDGGLWMPPYVGSSKCSDSQSGSPDGPLPNGGDTEDEKSENYCWNGNL 326
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00803 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 315 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Sain12g00803 326 MobiDBLite consensus disorder prediction 291 305 - -
Sain12g00803 326 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Sain12g00803 326 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 263 IPR006447 GO:0003677(InterPro)
Sain12g00803 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Sain12g00803 326 Pfam Myb-like DNA-binding domain 211 261 IPR001005 -
Sain12g00803 326 Gene3D - 205 267 - -
Sain12g00803 326 FunFam Myb family transcription factor 208 265 - -
Sain12g00803 326 Coils Coil 43 63 - -
Sain12g00803 326 MobiDBLite consensus disorder prediction 290 326 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00803 K28176 GARP family transcription factor, NIGT1 subfamily
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Event-related genes

Select Gene_1 Gene_2 Event_name
138833 Sain12g00803 Sain13g02081
138834 Sain12g00803 Sain3g00627
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:19820420 Sain13g00219 Sain-Chr13:7296440 dispersed
Sain Sain-Chr10:104907126 Sain12g00803 Sain-Chr12:19820420 wgd
Sain Sain-Chr12:19820420 Sain13g02081 Sain-Chr13:124838529 wgd
Sain Sain-Chr12:19820420 Sain3g00627 Sain-Chr3:17628367 wgd
Sain Sain-Chr12:19820420 Sain5g01495 Sain-Chr5:84882112 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain1g01725 ACH 5 211 G2-like Transcription Factor family AT2G01060 77.512 3.20e-104 301.0
Sain2g01665 ACH 180 387 G2-like Transcription Factor family AT1G32240 60.455 2.22e-63 205.0
Sain3g00627 ACH 12 320 G2-like Transcription Factor family AT4G37180 36.29 1.86e-58 192.0
Sain3g03255 . 15 187 G2-like Transcription Factor family AT2G01060 47.977 3.23e-52 169.0
Sain3g03515 ACH 1 312 G2-like Transcription Factor family AT3G46640 50.733 1.74e-86 261.0
Sain3g03961 ACH 56 376 G2-like Transcription Factor family AT4G28610 51.045 1.38e-97 296.0
Sain4g00550 ACH 2 325 G2-like Transcription Factor family AT1G25550 43.064 2.69e-78 241.0
Sain4g00880 ACH 1 76 G2-like Transcription Factor family AT1G14600 72.368 1.74e-31 115.0
Sain5g00023 . 1 400 G2-like Transcription Factor family AT5G16560 41.849 1.46e-66 214.0
Sain5g00024 . 1 338 G2-like Transcription Factor family AT5G16560 44.828 8.36e-60 194.0
Sain5g01495 . 209 274 G2-like Transcription Factor family AT1G25550 44.928 9.64e-12 64.3
Sain7g00899 . 81 263 G2-like Transcription Factor family AT5G42630 45.455 4.38e-50 167.0
Sain7g01182 . 8 67 G2-like Transcription Factor family AT1G25550 55.556 7.96e-16 68.6
Sain8g00271 . 15 408 G2-like Transcription Factor family AT4G28610 43.796 7.93e-80 250.0
Sain8g00996 ACH 44 199 G2-like Transcription Factor family AT2G40260 59.615 3.30e-49 168.0
Sain8g03155 . 1 400 G2-like Transcription Factor family AT5G16560 39.615 1.03e-67 219.0
Sain9g02285 . 9 417 G2-like Transcription Factor family AT2G20570 50.114 4.03e-105 315.0
Sain9g02314 ACH 5 257 G2-like Transcription Factor family AT2G01060 69.141 2.75e-109 315.0
Sain9g02948 . 42 143 G2-like Transcription Factor family AT2G42660 56.731 6.70e-31 117.0
Sain9g02956 . 227 325 G2-like Transcription Factor family AT1G49560 47.573 1.21e-17 74.7
Sain9g03783 ACH 21 82 G2-like Transcription Factor family AT2G02060 87.097 3.08e-33 120.0
Sain9g04064 . 25 223 G2-like Transcription Factor family AT1G69580 60.697 5.77e-75 231.0
Sain9g04289 ACH 8 324 G2-like Transcription Factor family AT1G25550 51.852 2.53e-104 309.0
Sain10g01529 ACH 196 386 G2-like Transcription Factor family AT1G32240 64.179 1.18e-69 221.0
Sain10g02283 ACH 1 289 G2-like Transcription Factor family AT3G24120 64.452 7.61e-130 369.0
Sain10g03319 ACH 1 386 G2-like Transcription Factor family AT1G32240 49.268 1.24e-89 273.0
Sain10g03347 . 1 245 G2-like Transcription Factor family AT5G45580 53.516 1.44e-77 234.0
Sain11g00491 ACH 56 342 G2-like Transcription Factor family AT2G40260 37.621 8.00e-45 157.0
Sain11g03023 ACH 18 401 G2-like Transcription Factor family AT5G18240 49.148 6.72e-115 338.0
Sain12g00803 ACH 4 321 G2-like Transcription Factor family AT2G03500 39.466 9.73e-57 188.0
Sain12g01816 . 6 146 G2-like Transcription Factor family AT2G01060 54.225 3.80e-50 164.0
Sain13g00219 . 1 432 G2-like Transcription Factor family AT2G03500 46.109 1.27e-121 360.0
Sain13g02081 ACH 6 317 G2-like Transcription Factor family AT2G03500 39.542 1.63e-59 197.0
Sain13g02722 . 14 163 G2-like Transcription Factor family AT3G12730 70.667 1.15e-70 221.0
Sain14g00520 . 16 79 G2-like Transcription Factor family AT3G12730 73.438 3.16e-32 110.0
Sain14g00530 ACH 3 401 G2-like Transcription Factor family AT5G18240 49.882 2.98e-121 355.0
Sain14g00867 ACH 1 276 G2-like Transcription Factor family AT3G24120 65.505 8.85e-126 358.0
Sain15g00271 . 1 335 G2-like Transcription Factor family AT3G10760 60.651 4.32e-97 287.0
Sain15g00648 . 183 345 G2-like Transcription Factor family AT5G06800 61.932 6.65e-65 209.0
Sain15g00903 ACH 1 312 G2-like Transcription Factor family AT3G46640 47.546 9.49e-76 233.0
Sain15g01011 . 37 108 G2-like Transcription Factor family AT2G42660 76.389 2.06e-33 122.0
Sain15g01300 ACH 1 367 G2-like Transcription Factor family AT4G28610 47.88 1.19e-102 310.0
Sain16g00541 . 1 335 G2-like Transcription Factor family AT3G10760 52.857 9.13e-82 248.0
Sain16g00885 ACH 1 214 G2-like Transcription Factor family AT3G46640 53.304 1.16e-62 199.0
Sain16g01964 . 73 172 G2-like Transcription Factor family AT2G40260 69.0 1.97e-38 139.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Sain Myb_DNA-binding 1.2e-06 CL0123 TF GARP-G2-like