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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00822 ATGTCGTCGGTTTTTGGGTCGGGAAAGATCATAACCTCCGACGAATATCTCCTCCAAATCAATGGTTTCCTACGAGTACACAAAGATGGCCGATGTGAAAGATTAGTCGGCAATAAGACCGTCCCCACCGAAATCGACCCTTCAACCGGAGTTCAATCAAAAGACGTCGTCATCTCGCCGGAAACCCACCTCTCTGTAAGGCTTTACTTGCCGGAAACCACCTCTGCAAATCAGAAATTACCGGTTCTGATTTACTTTCACGGCGGTGGTTTCGTGGTGGAATCCGCCAAATCTCCAACTTATCACCCTACAGTTAATCTTCTTGCGGCGAACTCCGGCGTAATCGTCGTCTCCGTCGACTACCGGCTGGCACCGGAGTATCTTCTCCCCATTGGATACAACGACTCGTGGGACGCGATCAAGTGGGTTGCCACCCACGGTAGAGAAGGTGGTCCAGAGCCGTGGTTAAACGACGTCGCAGATTTTAAAAAGGTGTTTCTCGCAGGAGATAGTGCCGGGGCGAATATCGCCCACCACACGGCAATACGGTTTGGGTCAGACCCGATTGATGCAATAAATCTGGAGGGTGTCATTCTTCTCCATCCGTATTTCGGAGGAGAAGACCCGATTGGTTCCGAATGTGGGAAACACAAGCAGTTGAAAGCGTTCACTGATCAGTTTTGGAAGTTGGCGAATCGTTCAGGTTGTGGGTTGGATGACCCGTTGTTTAACCCTGAGAAGGATCCGAATGTTGGGGGATTAGGGTGTTCCAAGATTCTTGTATGTGTTGCAGAGAAAGATTCTTTGAGGGATAGGGGGTTAAGTTACAGAGAGTTAATGGAGAAAAGTGGATGGAGTGGAGAATTGGAGATGATGGAGACGAAAGGTGAAGATCATGTGTTCTTTCTGTTCAATCCTACATGTGAGAATGCTTGTAGTTTGCATAACAGAGTGTGTACCTTTATCAATAAGACTCATTATCACTCTCGATGTTGA 996 47.89 MSSVFGSGKIITSDEYLLQINGFLRVHKDGRCERLVGNKTVPTEIDPSTGVQSKDVVISPETHLSVRLYLPETTSANQKLPVLIYFHGGGFVVESAKSPTYHPTVNLLAANSGVIVVSVDYRLAPEYLLPIGYNDSWDAIKWVATHGREGGPEPWLNDVADFKKVFLAGDSAGANIAHHTAIRFGSDPIDAINLEGVILLHPYFGGEDPIGSECGKHKQLKAFTDQFWKLANRSGCGLDDPLFNPEKDPNVGGLGCSKILVCVAEKDSLRDRGLSYRELMEKSGWSGELEMMETKGEDHVFFLFNPTCENACSLHNRVCTFINKTHYHSRC 331
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00822 331 Pfam alpha-beta hydrolase fold 83 302 IPR013094 GO:0016787(InterPro)
Sain12g00822 331 ProSitePatterns Lipolytic enzymes G-D-X-G family, putative serine active site. 165 177 IPR033140 -
Sain12g00822 331 PANTHER ARYLACETAMIDE DEACETYLASE 22 314 IPR050466 -
Sain12g00822 331 Gene3D alpha-beta hydrolase 16 324 IPR029058 -
Sain12g00822 331 SUPERFAMILY alpha-beta-Hydrolases 47 325 IPR029058 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00822 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138840 Sain12g00822 Sain13g02090
138841 Sain12g00822 Sain3g00642
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr10:260829979 Sain12g00822 Sain-Chr12:20848388 dispersed
Sain Sain-Chr11:55868338 Sain12g00822 Sain-Chr12:20848388 dispersed
Sain Sain-Chr12:20848388 Sain3g00642 Sain-Chr3:18261388 dispersed
Sain Sain-Chr14:44098118 Sain12g00822 Sain-Chr12:20848388 transposed
Sain Sain-Chr12:20848388 Sain13g02090 Sain-Chr13:125074916 wgd
Sain Sain-Chr12:20848388 Sain13g02076 Sain-Chr13:124659127 wgd
Sain Sain-Chr12:20848388 Sain3g00638 Sain-Chr3:18110937 wgd
Sain Sain-Chr12:20848388 Sain8g00604 Sain-Chr8:16540683 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain1g00294 . 31 333 Carbohydrate Esterase gene family AT1G68620 35.423 1.90e-50 169.0
Sain1g00295 . 248 334 Carbohydrate Esterase gene family AT5G16080 29.474 2.39e-08 48.1
Sain1g00296 . 54 334 Carbohydrate Esterase gene family AT5G16080 33.677 1.45e-49 166.0
Sain1g00390 . 115 220 Carbohydrate Esterase gene family AT1G53830 27.928 1.73e-08 49.3
Sain1g00393 ACH 39 225 Carbohydrate Esterase gene family AT5G53370 26.341 3.13e-12 63.2
Sain1g00394 . 79 224 Carbohydrate Esterase gene family AT5G53370 26.452 8.31e-10 55.8
Sain1g00400 . 11 511 Carbohydrate Esterase gene family AT2G45220 65.377 0.0 697.0
Sain1g00626 . 11 96 Carbohydrate Esterase gene family AT2G45220 39.08 6.60e-17 72.0
Sain2g00166 ACH 56 231 Carbohydrate Esterase gene family AT1G53830 23.497 3.92e-10 57.0
Sain2g00168 . 2 511 Carbohydrate Esterase gene family AT2G45220 61.641 0.0 643.0
Sain2g00169 . 8 511 Carbohydrate Esterase gene family AT2G45220 66.027 0.0 697.0
Sain2g00399 . 50 81 Carbohydrate Esterase gene family AT2G41530 81.25 1.38e-10 55.1
Sain2g01246 . 5 375 Carbohydrate Esterase gene family AT4G19420 52.926 2.55e-154 439.0
Sain2g01507 ACH 7 389 Carbohydrate Esterase gene family AT4G19420 65.195 0.0 556.0
Sain2g01508 ACH 6 389 Carbohydrate Esterase gene family AT4G19420 61.558 0.0 525.0
Sain2g01942 ACH 53 216 Carbohydrate Esterase gene family AT1G53830 31.609 1.57e-14 69.3
Sain2g01943 . 46 213 Carbohydrate Esterase gene family AT3G14310 28.824 2.58e-20 86.3
Sain2g01945 . 51 218 Carbohydrate Esterase gene family AT1G53830 28.824 1.64e-13 66.2
Sain3g00340 . 55 592 Carbohydrate Esterase gene family AT3G14310 63.333 0.0 693.0
Sain3g00341 . 50 592 Carbohydrate Esterase gene family AT3G14310 62.523 0.0 671.0
Sain3g00342 . 1 582 Carbohydrate Esterase gene family AT1G53840 58.163 0.0 679.0
Sain3g00565 . 12 359 Carbohydrate Esterase gene family AT5G47500 38.395 8.51e-86 261.0
Sain3g00638 ACH 14 314 Carbohydrate Esterase gene family AT1G19190 41.83 4.13e-86 259.0
Sain3g00642 ACH 14 314 Carbohydrate Esterase gene family AT1G19190 42.81 1.17e-86 261.0
Sain3g01241 . 2 313 Carbohydrate Esterase gene family AT1G19190 36.585 2.14e-66 209.0
Sain3g02425 . 39 357 Carbohydrate Esterase gene family AT5G47500 45.266 5.76e-102 304.0
Sain3g02608 . 6 525 Carbohydrate Esterase gene family AT4G33220 59.887 0.0 647.0
Sain3g02609 . 27 547 Carbohydrate Esterase gene family AT2G26440 61.143 0.0 643.0
Sain3g02614 . 59 583 Carbohydrate Esterase gene family AT1G53830 42.537 1.35e-139 416.0
Sain3g02861 . 2 314 Carbohydrate Esterase gene family AT1G19190 41.925 5.07e-81 247.0
Sain3g04193 . 20 560 Carbohydrate Esterase gene family AT5G49180 34.737 7.04e-99 310.0
Sain3g04224 . 18 577 Carbohydrate Esterase gene family AT1G02810 58.437 0.0 660.0
Sain3g04225 . 49 532 Carbohydrate Esterase gene family AT4G02300 51.534 3.58e-179 514.0
Sain3g04237 . 13 577 Carbohydrate Esterase gene family AT1G02810 55.263 0.0 614.0
Sain3g04253 . 62 216 Carbohydrate Esterase gene family AT3G14310 31.646 2.79e-17 77.4
Sain3g04318 ACH 1 343 Carbohydrate Esterase gene family AT3G63010 73.121 0.0 538.0
Sain4g00520 . 31 422 Carbohydrate Esterase gene family AT3G02410 61.538 0.0 511.0
Sain4g00734 . 38 554 Carbohydrate Esterase gene family AT1G23200 52.841 0.0 522.0
Sain4g00739 ACH 59 219 Carbohydrate Esterase gene family AT3G14310 27.778 2.62e-17 77.8
Sain4g00740 . 59 218 Carbohydrate Esterase gene family AT3G14310 26.708 1.11e-16 75.9
Sain4g01080 . 521 617 Carbohydrate Esterase gene family AT5G36210 37.755 5.12e-06 48.1
Sain4g01824 . 33 359 Carbohydrate Esterase gene family AT5G61570 53.235 4.37e-117 342.0
Sain4g01856 . 36 540 Carbohydrate Esterase gene family AT5G51500 52.953 0.0 536.0
Sain4g01858 ACH 51 218 Carbohydrate Esterase gene family AT1G53830 34.911 2.43e-25 100.0
Sain4g01859 ACH 51 231 Carbohydrate Esterase gene family AT1G53830 34.409 2.56e-27 106.0
Sain4g01872 . 51 221 Carbohydrate Esterase gene family AT1G53830 28.0 3.67e-22 91.3
Sain4g01874 . 51 222 Carbohydrate Esterase gene family AT1G53830 34.302 1.60e-25 101.0
Sain4g01875 . 51 216 Carbohydrate Esterase gene family AT1G53830 34.731 2.15e-24 98.2
Sain4g02086 . 1 587 Carbohydrate Esterase gene family AT5G53370 62.273 0.0 780.0
Sain4g03331 . 42 204 Carbohydrate Esterase gene family AT1G25141 28.409 1.22e-09 56.6
Sain5g00339 . 36 335 Carbohydrate Esterase gene family AT5G16080 31.629 1.15e-48 164.0
Sain5g01681 . 59 362 Carbohydrate Esterase gene family AT5G47500 37.46 1.73e-70 221.0
Sain5g01879 ACH 1 446 Carbohydrate Esterase gene family AT5G14310 66.595 0.0 613.0
Sain6g00010 . 55 592 Carbohydrate Esterase gene family AT3G14310 58.226 0.0 627.0
Sain6g00658 . 4 325 Carbohydrate Esterase gene family AT3G48700 43.344 7.88e-93 278.0
Sain7g00085 . 5 561 Carbohydrate Esterase gene family AT3G10710 54.497 0.0 625.0
Sain7g00133 . 223 280 Carbohydrate Esterase gene family AT1G24793 60.345 3.83e-20 79.3
Sain7g02230 . 4 582 Carbohydrate Esterase gene family AT1G53840 54.685 0.0 634.0
Sain7g02231 . 13 592 Carbohydrate Esterase gene family AT3G14310 66.384 0.0 769.0
Sain8g00022 . 32 359 Carbohydrate Esterase gene family AT5G61570 51.786 3.22e-110 324.0
Sain8g00102 . 29 324 Carbohydrate Esterase gene family AT5G16080 35.526 4.78e-53 176.0
Sain8g00573 . 31 540 Carbohydrate Esterase gene family AT5G51500 51.556 0.0 534.0
Sain8g00604 . 41 306 Carbohydrate Esterase gene family AT5G16080 35.816 1.95e-47 161.0
Sain8g00605 . 41 306 Carbohydrate Esterase gene family AT5G16080 37.234 9.12e-50 167.0
Sain8g00696 . 30 283 Carbohydrate Esterase gene family AT1G68620 41.509 8.25e-53 175.0
Sain8g02349 . 59 362 Carbohydrate Esterase gene family AT5G47500 38.365 1.89e-72 226.0
Sain8g02465 . 41 422 Carbohydrate Esterase gene family AT3G02410 73.56 0.0 602.0
Sain9g01292 . 320 398 Carbohydrate Esterase gene family AT3G27320 78.75 7.86e-42 139.0
Sain9g01293 . 163 288 Carbohydrate Esterase gene family AT5G14310 75.397 8.59e-61 192.0
Sain9g01834 . 2 247 Carbohydrate Esterase gene family AT1G53840 35.0 1.13e-35 132.0
Sain9g03017 . 25 137 Carbohydrate Esterase gene family AT3G16970 23.932 3.15e-06 42.4
Sain9g03509 ACH 28 319 Carbohydrate Esterase gene family AT5G16080 36.066 1.38e-56 185.0
Sain9g04148 ACH 72 229 Carbohydrate Esterase gene family AT5G53370 29.586 1.98e-17 78.2
Sain10g00140 . 68 389 Carbohydrate Esterase gene family AT1G05310 69.565 3.96e-180 504.0
Sain10g00145 . 493 695 Carbohydrate Esterase gene family AT5G36210 27.189 1.45e-16 82.4
Sain10g00289 . 59 132 Carbohydrate Esterase gene family AT5G47500 32.432 7.92e-14 63.2
Sain10g00338 . 163 335 Carbohydrate Esterase gene family AT5G14310 75.723 2.15e-91 273.0
Sain10g00721 . 22 362 Carbohydrate Esterase gene family AT5G47500 75.073 0.0 534.0
Sain10g00847 . 230 566 Carbohydrate Esterase gene family AT5G49180 56.471 8.83e-136 410.0
Sain10g02060 . 28 334 Carbohydrate Esterase gene family AT5G16080 31.23 6.05e-51 170.0
Sain10g02285 . 27 332 Carbohydrate Esterase gene family AT2G19150 42.444 2.95e-85 259.0
Sain10g02837 ACH 53 213 Carbohydrate Esterase gene family AT3G14310 28.834 3.18e-19 83.2
Sain10g03383 ACH 3 375 Carbohydrate Esterase gene family AT4G19420 51.444 3.49e-149 426.0
Sain10g03386 ACH 1 381 Carbohydrate Esterase gene family AT4G19420 53.866 1.58e-155 442.0
Sain10g03393 . 4 511 Carbohydrate Esterase gene family AT2G45220 43.13 8.61e-134 395.0
Sain10g03445 . 12 567 Carbohydrate Esterase gene family AT3G05610 46.524 0.0 540.0
Sain10g03680 . 1 446 Carbohydrate Esterase gene family AT5G14310 61.745 0.0 543.0
Sain10g04567 . 26 324 Carbohydrate Esterase gene family AT1G24793 57.525 5.22e-124 356.0
Sain10g05513 . 30 330 Carbohydrate Esterase gene family AT1G68620 39.61 2.38e-70 219.0
Sain11g00071 . 37 597 Carbohydrate Esterase gene family AT3G49220 68.007 0.0 792.0
Sain11g00162 . 10 409 Carbohydrate Esterase gene family AT5G23870 63.591 0.0 543.0
Sain11g00278 . 2 511 Carbohydrate Esterase gene family AT2G45220 39.583 4.74e-132 392.0
Sain11g00280 . 4 511 Carbohydrate Esterase gene family AT2G45220 40.417 2.69e-129 385.0
Sain11g00281 . 4 511 Carbohydrate Esterase gene family AT2G45220 41.856 1.79e-136 403.0
Sain11g00282 . 8 167 Carbohydrate Esterase gene family AT2G45220 29.091 1.27e-15 72.0
Sain11g00283 . 11 511 Carbohydrate Esterase gene family AT2G45220 62.109 0.0 659.0
Sain11g00289 ACH 58 221 Carbohydrate Esterase gene family AT1G53830 29.341 7.91e-19 81.6
Sain11g00291 ACH 55 222 Carbohydrate Esterase gene family AT1G53830 32.738 6.83e-21 87.8
Sain11g00293 . 82 594 Carbohydrate Esterase gene family AT3G47400 54.175 0.0 566.0
Sain11g00327 . 1 359 Carbohydrate Esterase gene family AT5G61570 51.467 1.19e-112 330.0
Sain11g01669 ACH 1 446 Carbohydrate Esterase gene family AT5G14310 68.094 0.0 628.0
Sain11g02230 . 1 342 Carbohydrate Esterase gene family AT5G16080 52.408 2.35e-117 341.0
Sain11g02773 . 1 342 Carbohydrate Esterase gene family AT3G05120 78.963 0.0 569.0
Sain11g02824 . 33 546 Carbohydrate Esterase gene family AT5G09760 61.284 0.0 652.0
Sain11g02825 . 35 546 Carbohydrate Esterase gene family AT5G09760 66.412 0.0 713.0
Sain12g00250 . 80 380 Carbohydrate Esterase gene family AT5G55590 70.53 1.41e-148 422.0
Sain12g00822 ACH 4 321 Carbohydrate Esterase gene family AT3G48690 47.17 5.20e-93 278.0
Sain12g01372 . 36 543 Carbohydrate Esterase gene family AT3G05620 65.953 0.0 699.0
Sain12g01373 . 14 642 Carbohydrate Esterase gene family AT3G05610 44.078 0.0 590.0
Sain12g01562 . 1 416 Carbohydrate Esterase gene family AT5G26670 68.496 0.0 595.0
Sain13g00974 . 4 416 Carbohydrate Esterase gene family AT5G26670 66.033 0.0 590.0
Sain13g02076 ACH 44 325 Carbohydrate Esterase gene family AT3G48700 39.223 3.89e-57 184.0
Sain13g02090 ACH 3 325 Carbohydrate Esterase gene family AT3G48700 40.123 2.87e-74 230.0
Sain14g00037 . 58 361 Carbohydrate Esterase gene family AT5G47500 38.961 5.13e-79 244.0
Sain14g00287 . 91 388 Carbohydrate Esterase gene family AT1G05310 56.04 8.47e-123 359.0
Sain14g00289 . 91 388 Carbohydrate Esterase gene family AT1G05310 56.04 8.47e-123 359.0
Sain14g00290 . 67 185 Carbohydrate Esterase gene family AT1G05310 43.333 1.45e-22 92.0
Sain14g00291 . 200 390 Carbohydrate Esterase gene family AT1G05310 54.45 1.11e-76 233.0
Sain14g00391 . 70 729 Carbohydrate Esterase gene family AT5G36210 74.247 0.0 1037.0
Sain14g01507 . 245 341 Carbohydrate Esterase gene family AT5G16080 25.49 2.07e-09 51.2
Sain14g01508 ACH 23 188 Carbohydrate Esterase gene family AT1G68620 38.202 1.72e-34 122.0
Sain14g01511 . 4 327 Carbohydrate Esterase gene family AT3G48700 46.914 1.11e-99 296.0
Sain15g01516 ACH 1 342 Carbohydrate Esterase gene family AT3G63010 73.41 0.0 539.0
Sain15g01571 . 4 571 Carbohydrate Esterase gene family AT4G02330 57.293 0.0 660.0
Sain16g00346 . 33 518 Carbohydrate Esterase gene family AT4G02320 51.911 0.0 525.0
Sain16g00389 . 6 588 Carbohydrate Esterase gene family AT3G62170 36.129 2.02e-111 344.0
Sain16g00393 . 1 588 Carbohydrate Esterase gene family AT2G47030 37.785 1.51e-129 390.0
Sain16g00437 . 58 216 Carbohydrate Esterase gene family AT3G14310 28.931 2.03e-16 74.3
Sain16g00447 . 1 612 Carbohydrate Esterase gene family AT2G26450 48.32 0.0 577.0
Sain16g00524 . 2 282 Carbohydrate Esterase gene family AT2G41530 80.142 2.37e-175 484.0
Sain16g00913 . 163 384 Carbohydrate Esterase gene family AT5G14310 74.324 9.52e-121 350.0
Sain10000375.1g00004 . 58 301 Carbohydrate Esterase gene family AT1G68620 34.387 1.18e-43 151.0
Sain10000412.1g00001 . 9 427 Carbohydrate Esterase gene family AT3G09410 62.291 0.0 561.0