AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00823 ATGATCGAGGAATTAACAGTGGATAGAAAGCGATGCAAAATAACAGATAAGGTTTTGGTGATGGAGGTTTCAAATTCGCGTGGAGGTGTGCGCCGGAGTAGAGATTGTGAAGTTACGAGCTCCGTCAACGGTAAGAGAAGAAAATTAGGTTCTCAGGATCAGGAGAATGTTTATCAGTCTCGACGTGATGTTGACGTGAATTTTCAGGAGAATGTTCTTTCGACGGCGGTATCTGCTACCACTGATCATGCTTCGACTTTTATGTGCTTTAGAAATGACGATTCCAGACCAGATCTGAAGGCCGAGTGTATTTCCGAAACTGAAGTCTTCATCTCCAGTAACGACGGTTTCAGTGGAGAGACAAGTGTGTCAAGTGTGATTTGCTTAGAATCAGAAGAAATGGAGTCGGTATCCACGTCTACTCCTAAGAAGAAGAATTCCGCACGGCCAAATGAGGCTACATCCCATCGTAAAGCATCAGCGGCGGCTAAGATGCCTTCTGCGGCGGAGCTTGAAGAATTTTTCTCCGAAGCGGAAAAGTACGAGAAGAAACGATTCGCAGATAAGTACAACTATGATATCGTGAAAGACGCTCCAATGGAAGGAAGGTATCAATGGGTTCGGTTAAAGCCATAA 636 44.65 MIEELTVDRKRCKITDKVLVMEVSNSRGGVRRSRDCEVTSSVNGKRRKLGSQDQENVYQSRRDVDVNFQENVLSTAVSATTDHASTFMCFRNDDSRPDLKAECISETEVFISSNDGFSGETSVSSVICLESEEMESVSTSTPKKKNSARPNEATSHRKASAAAKMPSAAELEEFFSEAEKYEKKRFADKYNYDIVKDAPMEGRYQWVRLKP 211
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00823 211 MobiDBLite consensus disorder prediction 134 148 - -
Sain12g00823 211 PIRSF CKI-KRP-plant 7 211 IPR044275 GO:0004861(InterPro)|GO:0045736(InterPro)|GO:0051726(InterPro)
Sain12g00823 211 MobiDBLite consensus disorder prediction 32 56 - -
Sain12g00823 211 Pfam Cyclin-dependent kinase inhibitor 165 209 IPR003175 GO:0004861(InterPro)|GO:0005634(InterPro)|GO:0051726(InterPro)
Sain12g00823 211 MobiDBLite consensus disorder prediction 134 165 - -
Sain12g00823 211 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 27 211 IPR044275 GO:0004861(InterPro)|GO:0045736(InterPro)|GO:0051726(InterPro)
Sain12g00823 211 Gene3D p27 161 211 IPR044898 -
Sain12g00823 211 MobiDBLite consensus disorder prediction 32 52 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00823 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
138842 Sain12g00823 Sain3g00646
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:20923605 Sain3g00646 Sain-Chr3:18429897 dispersed
Sain Sain-Chr11:48862207 Sain12g00823 Sain-Chr12:20923605 wgd
Sain Sain-Chr12:20923605 Sain3g00645 Sain-Chr3:18400737 wgd
Sain Sain-Chr12:20923605 Sain5g01455 Sain-Chr5:83438526 wgd
Sain Sain-Chr12:20923605 Sain8g02559 Sain-Chr8:160594352 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain1g00250 . 20 307 Core Cell Cycle gene family AT1G76540 36.177 3.67e-58 192.0
Sain1g01323 . 10 290 Core Cell Cycle gene family AT3G48750 35.959 4.77e-57 186.0
Sain2g00063 . 1 294 Core Cell Cycle gene family AT3G48750 84.354 0.0 527.0
Sain2g00635 . 23 434 Core Cell Cycle gene family AT5G06150 56.25 1.42e-152 437.0
Sain2g00871 . 204 340 Core Cell Cycle gene family AT5G10270 45.255 2.53e-37 131.0
Sain2g01080 . 18 363 Core Cell Cycle gene family AT5G10270 51.873 2.53e-119 360.0
Sain2g01410 . 76 244 Core Cell Cycle gene family AT5G27620 24.211 4.86e-06 47.0
Sain2g01445 . 204 340 Core Cell Cycle gene family AT5G10270 45.985 1.88e-37 131.0
Sain2g01503 . 16 198 Core Cell Cycle gene family AT1G80370 34.043 1.30e-12 63.2
Sain2g02018 . 164 287 Core Cell Cycle gene family AT3G48750 31.915 3.21e-11 63.9
Sain3g00645 . 91 195 Core Cell Cycle gene family AT1G49620 44.643 1.36e-21 86.3
Sain3g00646 ACH 91 195 Core Cell Cycle gene family AT1G49620 39.823 4.30e-20 82.0
Sain3g00697 ACH 14 300 Core Cell Cycle gene family AT4G34160 51.351 1.22e-98 295.0
Sain3g00814 ACH 52 296 Core Cell Cycle gene family AT1G70210 42.51 3.75e-54 178.0
Sain3g01445 . 20 312 Core Cell Cycle gene family AT1G76540 34.237 4.06e-55 183.0
Sain3g02123 . 1 317 Core Cell Cycle gene family AT5G27620 60.188 1.39e-137 391.0
Sain4g00332 . 17 371 Core Cell Cycle gene family AT5G64960 45.33 7.39e-96 306.0
Sain4g00543 . 8 302 Core Cell Cycle gene family AT3G54180 25.075 1.57e-12 67.0
Sain4g01141 . 11 315 Core Cell Cycle gene family AT1G20930 86.23 0.0 557.0
Sain4g01142 . 11 315 Core Cell Cycle gene family AT1G20930 86.885 0.0 561.0
Sain4g02400 . 5 397 Core Cell Cycle gene family AT1G73690 76.131 0.0 607.0
Sain4g03282 . 1 66 Core Cell Cycle gene family AT3G48750 89.394 3.69e-33 115.0
Sain5g00545 . 16 198 Core Cell Cycle gene family AT1G80370 34.043 6.36e-13 63.9
Sain5g00552 . 20 391 Core Cell Cycle gene family AT5G10270 41.91 2.32e-91 289.0
Sain5g01335 ACH 14 314 Core Cell Cycle gene family AT1G20930 30.818 1.29e-40 145.0
Sain5g01382 ACH 7 367 Core Cell Cycle gene family AT5G67260 44.648 1.18e-96 290.0
Sain5g01455 ACH 83 195 Core Cell Cycle gene family AT1G49620 39.13 1.04e-16 73.9
Sain6g00269 . 18 363 Core Cell Cycle gene family AT5G10270 48.864 1.22e-111 342.0
Sain6g00374 ACH 19 305 Core Cell Cycle gene family AT1G76540 24.556 5.28e-27 108.0
Sain6g00411 . 16 198 Core Cell Cycle gene family AT1G80370 33.511 2.99e-12 62.0
Sain6g00561 ACH 1 353 Core Cell Cycle gene family AT5G43080 60.054 2.41e-153 434.0
Sain6g01018 . 18 391 Core Cell Cycle gene family AT5G10270 45.646 6.20e-105 327.0
Sain6g01627 ACH 42 302 Core Cell Cycle gene family AT5G65420 44.765 1.16e-69 218.0
Sain7g00659 ACH 1 354 Core Cell Cycle gene family AT5G43080 57.682 1.67e-146 417.0
Sain7g00721 . 18 288 Core Cell Cycle gene family AT4G34160 46.735 1.42e-80 248.0
Sain7g01682 . 16 333 Core Cell Cycle gene family AT5G10270 46.462 8.35e-89 283.0
Sain7g01784 . 18 357 Core Cell Cycle gene family AT5G10270 52.199 7.02e-116 352.0
Sain7g01994 . 46 459 Core Cell Cycle gene family AT1G80370 52.019 6.88e-142 411.0
Sain8g00321 . 1 505 Core Cell Cycle gene family AT5G10270 76.673 0.0 766.0
Sain8g01537 ACH 42 303 Core Cell Cycle gene family AT5G65420 48.529 3.21e-72 224.0
Sain8g02358 . 24 357 Core Cell Cycle gene family AT5G10270 48.503 8.67e-109 336.0
Sain8g02559 ACH 86 195 Core Cell Cycle gene family AT1G49620 40.909 2.50e-18 76.6
Sain8g02604 ACH 19 365 Core Cell Cycle gene family AT5G67260 47.592 1.32e-99 297.0
Sain8g03089 ACH 14 429 Core Cell Cycle gene family AT1G20610 54.524 1.10e-155 445.0
Sain9g00305 . 18 366 Core Cell Cycle gene family AT5G10270 52.571 2.67e-118 358.0
Sain9g00402 ACH 19 304 Core Cell Cycle gene family AT1G76540 25.449 3.36e-26 106.0
Sain9g00625 . 18 357 Core Cell Cycle gene family AT5G10270 46.199 5.47e-102 319.0
Sain9g01103 . 11 316 Core Cell Cycle gene family AT4G37630 34.076 1.47e-43 149.0
Sain9g01299 . 1 459 Core Cell Cycle gene family AT1G44110 59.958 0.0 546.0
Sain9g01723 ACH 40 333 Core Cell Cycle gene family AT2G22490 48.161 3.73e-76 236.0
Sain9g01847 . 21 370 Core Cell Cycle gene family AT5G10270 45.304 1.18e-100 312.0
Sain9g01935 . 1 299 Core Cell Cycle gene family AT4G03270 41.64 4.43e-69 215.0
Sain9g02231 . 18 409 Core Cell Cycle gene family AT5G10270 48.214 7.24e-119 363.0
Sain9g03736 . 210 398 Core Cell Cycle gene family AT5G25380 35.567 8.24e-23 99.8
Sain9g03999 . 12 339 Core Cell Cycle gene family AT1G70210 59.821 4.16e-129 370.0
Sain10g00082 . 1 479 Core Cell Cycle gene family AT5G10270 79.055 0.0 745.0
Sain10g00210 . 18 470 Core Cell Cycle gene family AT5G63610 78.478 0.0 722.0
Sain10g00879 . 1 294 Core Cell Cycle gene family AT3G48750 38.591 4.96e-70 223.0
Sain10g01104 . 1 427 Core Cell Cycle gene family AT5G25380 48.473 6.00e-146 424.0
Sain10g01127 . 14 308 Core Cell Cycle gene family AT1G76540 25.648 7.19e-29 112.0
Sain10g02290 ACH 1 220 Core Cell Cycle gene family AT5G48820 42.373 7.21e-43 142.0
Sain10g02591 ACH 1 81 Core Cell Cycle gene family AT2G27960 95.062 7.28e-56 165.0
Sain10g03485 . 18 363 Core Cell Cycle gene family AT5G10270 51.009 1.41e-118 358.0
Sain10g03524 . 1 434 Core Cell Cycle gene family AT5G25380 47.667 7.57e-137 400.0
Sain10g03691 . 17 371 Core Cell Cycle gene family AT5G64960 44.78 1.09e-94 303.0
Sain10g03769 . 15 1009 Core Cell Cycle gene family AT3G12280 68.904 0.0 1372.0
Sain10g05490 . 5 289 Core Cell Cycle gene family AT3G48750 40.411 1.19e-76 233.0
Sain11g00608 . 16 198 Core Cell Cycle gene family AT1G80370 34.043 8.80e-13 63.5
Sain11g01836 . 26 357 Core Cell Cycle gene family AT5G10270 47.59 2.26e-107 332.0
Sain11g01891 . 349 411 Core Cell Cycle gene family AT3G11520 50.0 1.23e-13 62.0
Sain11g01990 ACH 87 195 Core Cell Cycle gene family AT1G49620 41.071 4.30e-17 74.3
Sain11g02078 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 8.36e-43 150.0
Sain11g02098 ACH 12 304 Core Cell Cycle gene family AT1G76540 31.629 5.26e-42 149.0
Sain11g02107 . 7 322 Core Cell Cycle gene family AT4G37630 34.132 1.51e-50 168.0
Sain11g02406 ACH 10 422 Core Cell Cycle gene family AT2G17620 56.471 2.24e-144 416.0
Sain11g03281 . 3 354 Core Cell Cycle gene family AT5G43080 49.046 1.32e-114 336.0
Sain11g03292 ACH 1 220 Core Cell Cycle gene family AT5G48820 44.397 1.31e-46 152.0
Sain11g04687 . 1 430 Core Cell Cycle gene family AT1G76310 61.048 9.36e-180 506.0
Sain12g00089 . 21 647 Core Cell Cycle gene family AT1G16330 46.049 8.78e-171 501.0
Sain12g00277 . 1 256 Core Cell Cycle gene family AT4G03270 29.008 3.05e-22 93.6
Sain12g00327 . 18 361 Core Cell Cycle gene family AT5G10270 53.623 3.04e-120 367.0
Sain12g00516 . 204 340 Core Cell Cycle gene family AT5G10270 46.715 8.33e-39 135.0
Sain12g00823 ACH 91 195 Core Cell Cycle gene family AT1G49620 44.737 2.86e-23 90.9
Sain12g00864 ACH 14 282 Core Cell Cycle gene family AT4G34160 55.357 6.56e-104 308.0
Sain12g00931 ACH 50 282 Core Cell Cycle gene family AT1G70210 40.496 1.17e-57 187.0
Sain12g01116 . 17 38 Core Cell Cycle gene family AT2G27960 90.909 3.28e-07 42.0
Sain12g01977 . 2 309 Core Cell Cycle gene family AT3G54180 82.468 0.0 532.0
Sain13g00166 . 1 478 Core Cell Cycle gene family AT4G28980 56.198 0.0 522.0
Sain13g01088 . 223 365 Core Cell Cycle gene family AT1G76310 23.313 5.71e-06 46.2
Sain13g01453 . 204 340 Core Cell Cycle gene family AT5G10270 47.445 1.89e-40 139.0
Sain13g01627 . 18 366 Core Cell Cycle gene family AT5G10270 51.42 1.58e-116 357.0
Sain13g01634 . 20 312 Core Cell Cycle gene family AT1G76540 33.898 1.55e-53 179.0
Sain14g00402 . 14 304 Core Cell Cycle gene family AT1G76540 26.1 2.80e-28 112.0
Sain14g00609 ACH 1 80 Core Cell Cycle gene family AT2G27970 91.463 1.30e-52 157.0
Sain14g02071 . 10 290 Core Cell Cycle gene family AT3G48750 35.395 2.01e-56 185.0
Sain14g02257 . 187 275 Core Cell Cycle gene family AT3G48750 31.111 3.48e-13 61.6
Sain14g02430 . 58 296 Core Cell Cycle gene family AT4G03270 43.568 5.33e-56 181.0
Sain15g00200 . 4 325 Core Cell Cycle gene family AT5G02110 27.988 8.88e-27 107.0
Sain15g00253 . 1 437 Core Cell Cycle gene family AT5G06150 53.377 4.44e-152 437.0
Sain15g00613 . 1 294 Core Cell Cycle gene family AT3G48750 87.075 0.0 539.0
Sain15g00615 . 1 294 Core Cell Cycle gene family AT3G48750 87.075 0.0 538.0
Sain15g00705 . 1 287 Core Cell Cycle gene family AT3G48750 36.027 7.33e-57 186.0
Sain15g01207 ACH 55 239 Core Cell Cycle gene family AT5G27620 24.227 2.16e-11 61.2
Sain15g01246 ACH 1 221 Core Cell Cycle gene family AT5G48820 40.741 3.45e-41 139.0
Sain16g00084 ACH 99 273 Core Cell Cycle gene family AT5G27620 26.486 7.66e-12 62.4
Sain16g00111 ACH 1 222 Core Cell Cycle gene family AT5G48820 45.679 4.45e-47 154.0
Sain16g00306 . 12 497 Core Cell Cycle gene family AT1G02970 57.028 0.0 548.0
Sain16g01076 . 1 317 Core Cell Cycle gene family AT5G27620 60.188 1.92e-138 393.0
Sain10000673.1g00005 . 10 346 Core Cell Cycle gene family AT1G66750 34.971 8.51e-65 211.0