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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00826 ATGGCGATTGCTCCTCAATCCCCACCCAAGAGTACAACCCCTTTGTCTTCTAAGTGGAAACAGATAAAAGAGGTGAAGATTAAGAAAAGATTATTACAGAAAAAATCTTCATTTTCTAAACAGGGGGTTAAGACAGTGAACTTTGATCTCGCTAGCAATTTAGTAGTAAGCTATGACCCTAAGGTTGCTGCTTCAGCCCAACCTCCTGATTCTCAAGCCAAGTCTGCTGCAATTGACCGAGCCAATGAGGTTCAAGCAAGCCTACCGTCTGAATTGCCTAGTTTTGTTAAGCCGATGCTCCCATCACATGTTACGGGTGGCTTTTGGCTGGGGCTTCCCAAGAAATTTTGTGATGTTCATCTGCCAAAACATGACGAAATGGTTGTGCTTGTGGATGAAGATCAGCAAGAATTCAATACAAAGTATCTTGTGGACAAAGCTGGATTAAGCGGTGGCTGGAGAGGGTTCTCGATCGCTCACAAATTGCTTGAGGGAGATGCTCTAGTTTTCCAATTGATTCAACATTGGAAATTTAAGGTCTACATTGTGAGGGTAAACGGTCTAAATGAAATTGATGGGGCTCTTGGCCTTCTTAACTTGGTTCCTTTTGGCATGAACTGTCCAATAAAAACTGACTCCACGAATCATCAGAGAGCTGAAGATATGGATACAAACCTGCATCAAAATAATATTCATGATAAAGGTTTGGTGACGTGTGATCAATCAGGAGACGATAGCGAGTATGTAGACTCAGAAGTTTCTCAAGGACTCAGATTCTCACAATCTGTTCTTGAGTTCAAGGATATAAAGGGTATTGATGATTTCAACATCGTTATGGATGGTTTAATCATAGATTCCGAAATACCAAAGCATTTTCAGATCAAATACTACGATCTATGTTGTAGTCAAAAGACATATCTTCATGAAAACCTGCTCAAGGGTCTGAATGTTCAACTAGCAGTTGGGATAATTCTTGAAACCGTTACAATCTCTGACGCCATCAGAGCTTGTAAAGCGAGCACCATTCGTGACGATTTTGAAACATGGGATAAAACTCTAAAGGCCTTTGAAGAGGTGGGTATGAGAGTTGGGTTCTTACGAAACCGGATCAGTAAACTTGCAGGTTTATTGTTCGATTCAGAGGTGATCTTGGAAGCAAAGAGGAATGAACAAGTGAAAGCAGAAGATGAGATGAGAGTTATGAACCAAAAGCTTTGTGGGGTTAAAGAAGCAATCAAGAATCTTGATGTTGAAATTGAAATTCTGAAGATGAAAGGCCAGAAACTTGAGCCAGCTTTTCTTAAAGAAGCTAATGCGCCTTGGTGA 1326 40.72 MAIAPQSPPKSTTPLSSKWKQIKEVKIKKRLLQKKSSFSKQGVKTVNFDLASNLVVSYDPKVAASAQPPDSQAKSAAIDRANEVQASLPSELPSFVKPMLPSHVTGGFWLGLPKKFCDVHLPKHDEMVVLVDEDQQEFNTKYLVDKAGLSGGWRGFSIAHKLLEGDALVFQLIQHWKFKVYIVRVNGLNEIDGALGLLNLVPFGMNCPIKTDSTNHQRAEDMDTNLHQNNIHDKGLVTCDQSGDDSEYVDSEVSQGLRFSQSVLEFKDIKGIDDFNIVMDGLIIDSEIPKHFQIKYYDLCCSQKTYLHENLLKGLNVQLAVGIILETVTISDAIRACKASTIRDDFETWDKTLKAFEEVGMRVGFLRNRISKLAGLLFDSEVILEAKRNEQVKAEDEMRVMNQKLCGVKEAIKNLDVEIEILKMKGQKLEPAFLKEANAPW 441
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00826 441 Gene3D - 71 187 IPR015300 -
Sain12g00826 441 SMART B3-2 95 186 IPR003340 GO:0003677(InterPro)
Sain12g00826 441 Coils Coil 384 404 - -
Sain12g00826 441 CDD B3-DNA 93 184 IPR003340 GO:0003677(InterPro)
Sain12g00826 441 ProSiteProfiles B3 DNA-binding domain profile. 95 186 IPR003340 GO:0003677(InterPro)
Sain12g00826 441 Pfam B3 DNA binding domain 95 184 IPR003340 GO:0003677(InterPro)
Sain12g00826 441 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 186 IPR044837 -
Sain12g00826 441 SUPERFAMILY DNA-binding pseudobarrel domain 88 187 IPR015300 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00826 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138843 Sain12g00826 Sain3g00649
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:21269212 Sain6g00644 Sain-Chr6:18572388 dispersed
Sain Sain-Chr12:21269212 Sain12g00829 Sain-Chr12:21326534 proximal
Sain Sain-Chr12:21269212 Sain3g00649 Sain-Chr3:18588992 wgd
Sain Sain-Chr12:21269212 Sain5g01449 Sain-Chr5:83213608 wgd
Sain Sain-Chr12:21269212 Sain8g02561 Sain-Chr8:160658879 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain1g01238 . 1 797 B3 DNA Binding Superfamily AT5G37020 56.958 0.0 826.0
Sain1g01403 ACH 1 559 B3 DNA Binding Superfamily AT2G33860 52.241 0.0 540.0
Sain1g01523 . 2 667 B3 DNA Binding Superfamily AT4G32010 37.879 3.71e-142 435.0
Sain2g01681 ACH 51 307 B3 DNA Binding Superfamily AT1G01030 48.496 1.80e-66 215.0
Sain2g01756 ACH 1 623 B3 DNA Binding Superfamily AT4G23980 58.805 0.0 677.0
Sain3g00649 ACH 5 227 B3 DNA Binding Superfamily AT3G19184 60.177 1.53e-84 251.0
Sain3g01858 . 1 427 B3 DNA Binding Superfamily AT1G19220 73.973 0.0 643.0
Sain3g02628 . 1 491 B3 DNA Binding Superfamily AT1G19220 75.813 0.0 739.0
Sain3g03040 ACH 1 751 B3 DNA Binding Superfamily AT4G32010 49.756 0.0 709.0
Sain3g03878 . 1 672 B3 DNA Binding Superfamily AT4G32010 48.061 0.0 659.0
Sain3g03903 . 4 234 B3 DNA Binding Superfamily AT5G58280 51.452 1.73e-73 227.0
Sain3g04004 . 12 719 B3 DNA Binding Superfamily AT3G24650 44.774 5.51e-157 471.0
Sain4g01347 ACH 1 660 B3 DNA Binding Superfamily AT4G30080 56.444 0.0 686.0
Sain5g01449 ACH 112 230 B3 DNA Binding Superfamily AT3G19184 48.739 1.07e-35 132.0
Sain6g00477 ACH 1 855 B3 DNA Binding Superfamily AT5G62000 61.741 0.0 1012.0
Sain6g00644 . 1 229 B3 DNA Binding Superfamily AT3G19184 53.648 6.43e-73 221.0
Sain7g01665 . 18 124 B3 DNA Binding Superfamily AT3G18960 30.841 3.98e-12 63.9
Sain8g00351 . 36 458 B3 DNA Binding Superfamily AT1G19850 74.413 0.0 664.0
Sain8g01307 ACH 1 584 B3 DNA Binding Superfamily AT4G30080 54.925 0.0 582.0
Sain8g01993 . 45 313 B3 DNA Binding Superfamily AT3G26790 41.912 5.83e-58 187.0
Sain8g02510 . 4 110 B3 DNA Binding Superfamily AT5G66980 36.111 6.73e-18 77.0
Sain8g02561 ACH 112 230 B3 DNA Binding Superfamily AT3G19184 46.218 4.78e-32 122.0
Sain8g03050 . 167 289 B3 DNA Binding Superfamily AT1G05930 25.6 1.54e-07 50.1
Sain8g03125 . 1 794 B3 DNA Binding Superfamily AT5G37020 66.019 0.0 1009.0
Sain9g00291 ACH 1 850 B3 DNA Binding Superfamily AT5G62000 59.139 0.0 949.0
Sain9g02851 ACH 1 486 B3 DNA Binding Superfamily AT2G33860 52.642 1.30e-176 513.0
Sain9g04316 . 136 241 B3 DNA Binding Superfamily AT4G03170 33.621 7.02e-07 47.4
Sain10g01026 . 216 281 B3 DNA Binding Superfamily AT1G19850 72.727 1.23e-27 102.0
Sain10g01033 . 164 289 B3 DNA Binding Superfamily AT1G05930 34.351 5.34e-09 54.3
Sain10g01190 ACH 10 591 B3 DNA Binding Superfamily AT2G46530 60.797 0.0 699.0
Sain10g01959 . 12 669 B3 DNA Binding Superfamily AT4G30080 56.076 0.0 694.0
Sain10g02525 ACH 62 764 B3 DNA Binding Superfamily AT5G60450 54.74 0.0 723.0
Sain10g03102 ACH 1 615 B3 DNA Binding Superfamily AT4G23980 60.153 0.0 709.0
Sain11g00897 ACH 1 668 B3 DNA Binding Superfamily AT4G30080 54.928 0.0 641.0
Sain11g01432 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 56.25 0.0 763.0
Sain11g01456 . 2 693 B3 DNA Binding Superfamily AT2G28350 55.649 0.0 719.0
Sain11g02464 . 1 794 B3 DNA Binding Superfamily AT5G37020 67.797 0.0 1025.0
Sain12g00826 ACH 108 230 B3 DNA Binding Superfamily AT3G19184 59.35 1.55e-45 157.0
Sain12g00829 . 46 199 B3 DNA Binding Superfamily AT5G42700 37.013 8.11e-28 106.0
Sain12g01312 . 1 663 B3 DNA Binding Superfamily AT1G59750 66.962 0.0 870.0
Sain12g01930 ACH 1 779 B3 DNA Binding Superfamily AT4G32010 49.102 0.0 726.0
Sain13g00014 . 1 479 B3 DNA Binding Superfamily AT1G19220 78.125 0.0 757.0
Sain13g01368 . 1 491 B3 DNA Binding Superfamily AT1G19220 68.811 0.0 673.0
Sain13g01369 . 296 373 B3 DNA Binding Superfamily AT5G20730 49.367 5.01e-17 75.9
Sain13g02074 . 156 289 B3 DNA Binding Superfamily AT1G05930 31.618 1.55e-10 55.8
Sain13g02321 . 156 289 B3 DNA Binding Superfamily AT1G05930 31.618 4.95e-11 57.4
Sain14g01206 . 1016 1150 B3 DNA Binding Superfamily AT5G20730 57.143 2.63e-46 161.0
Sain15g01061 . 9 769 B3 DNA Binding Superfamily AT2G30470 45.771 0.0 632.0
Sain16g00336 . 201 355 B3 DNA Binding Superfamily AT1G19850 64.198 2.02e-56 191.0
Sain16g00979 . 1 447 B3 DNA Binding Superfamily AT1G19220 70.395 0.0 628.0
Sain10000887.1g00001 . 32 895 B3 DNA Binding Superfamily AT1G19850 59.267 0.0 966.0
Sain10001229.1g00001 . 251 387 B3 DNA Binding Superfamily AT4G32010 48.551 9.62e-37 136.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Sain B3 8.9e-15 CL0405 TF B3