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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00840 ATGGCAGACTCCAAACAACCTCCTCATCTTCTGTTCAAACAACGCTCCTGGTCCCCTGACATCCACCGCGACAAAGAATGGCAGAAGCTCAAGTTCAAACAGTTACGACGTGATCGCCACCGCCGCAGCAAGAGTATTGATGCCGACGTTGATGTCACTGATGATGATGTAAAGGAGCTTAAAGCGTGTTTTGAATTAGGTTTCGGTTTCGATCCGTCTAACGATTTGGATCCGAAACTCACACAAGCTTTTCCCGCTCTCGAGTTGTACGCAGCCGTTAATCGGCAGTACAATAATAGACTCCTCTCAAGGTCTTCTTCATCGCTAAGTTCCGATTCTTCTTCAAGTTCATCAAGCTATACCACCGCCATTATTGATCCAAGTGATGATCCGCAAAAGGTGAAGACGAAATTGAAACATTGGGCGCAAGTTGTTTCGTGTTCTATTCTGGATTCTTCTTCGCAGCCAATAACAAAAATTGCAGAATAG 489 45.19 MADSKQPPHLLFKQRSWSPDIHRDKEWQKLKFKQLRRDRHRRSKSIDADVDVTDDDVKELKACFELGFGFDPSNDLDPKLTQAFPALELYAAVNRQYNNRLLSRSSSSLSSDSSSSSSSYTTAIIDPSDDPQKVKTKLKHWAQVVSCSILDSSSQPITKIAE 162
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00840 162 MobiDBLite consensus disorder prediction 104 131 - -
Sain12g00840 162 PANTHER OSJNBA0071G03.3 PROTEIN 10 150 - -
Sain12g00840 162 MobiDBLite consensus disorder prediction 104 126 - -
Sain12g00840 162 Pfam Protein of unknown function (DUF1685) 52 110 IPR012881 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00840 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr14:40951490 Sain12g00840 Sain-Chr12:21667470 transposed
Sain Sain-Chr11:48968854 Sain12g00840 Sain-Chr12:21667470 wgd
Sain Sain-Chr12:21667470 Sain13g02053 Sain-Chr13:124048869 wgd
Sain Sain-Chr12:21667470 Sain5g01435 Sain-Chr5:82846889 wgd
Sain Sain-Chr12:21667470 Sain8g02564 Sain-Chr8:160838976 wgd