Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00845 | ATGGCGATTGCATCTTCTTCTTCTGCTTATCACTCTCTTTTGCCTCACAATCGCAACTGCACACCGCCATCTTTCTCGTTTGCTTCCCCTCGCCAAATTAATGGTTCCTCTGCTATCTCTTTCCGCCCACCCAAAACCCCATCCCCTCTTCGAGTCGTCTCTATGCGACGCCAATCTAAAGCAAAAGTGGTGAGTGGACAGTCATGGGAGGCATCGATTATGGACAGCAAAACACCGGTTCTGGTGGAGTTCTACGCGAGTTGGTGCGGACCATGCCAGATGGTGCACCGTGTGATTGATGAGATCGCGGGTGAGTATGCTGGGAGGCTCAAGTGTTTTGTGCTGAATGCGGATCAAGACCCAGAAATCACAGAGGAATACGAGATCAAGGCTGTGCCCATTGTGCTATTGTTCAAGAATGGTCAGCAATTGGAGTCAGTGGTTGGGACCATGCCCAAAGAATTCTATGTGGCTGCTATTGAAAGGGTTCTTTCATCCTCATCTTGA | 507 | 49.51 | MAIASSSSAYHSLLPHNRNCTPPSFSFASPRQINGSSAISFRPPKTPSPLRVVSMRRQSKAKVVSGQSWEASIMDSKTPVLVEFYASWCGPCQMVHRVIDEIAGEYAGRLKCFVLNADQDPEITEEYEIKAVPIVLLFKNGQQLESVVGTMPKEFYVAAIERVLSSSS | 168 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00845 | 168 | FunFam | Thioredoxin | 55 | 167 | - | - | |
| Sain12g00845 | 168 | SUPERFAMILY | Thioredoxin-like | 52 | 165 | IPR036249 | - | |
| Sain12g00845 | 168 | Gene3D | Glutaredoxin | 62 | 167 | - | - | |
| Sain12g00845 | 168 | CDD | TRX-family | 72 | 161 | - | - | |
| Sain12g00845 | 168 | ProSiteProfiles | Thioredoxin domain profile. | 50 | 165 | IPR013766 | - | |
| Sain12g00845 | 168 | Pfam | Thioredoxin | 62 | 160 | IPR013766 | - | |
| Sain12g00845 | 168 | PANTHER | GEO12009P1 | 57 | 164 | - | GO:0005737(PANTHER)|GO:0015035(PANTHER) | |
| Sain12g00845 | 168 | PRINTS | Thioredoxin family signature | 88 | 97 | - | - | |
| Sain12g00845 | 168 | PRINTS | Thioredoxin family signature | 80 | 88 | - | - | |
| Sain12g00845 | 168 | PRINTS | Thioredoxin family signature | 128 | 139 | - | - | |
| Sain12g00845 | 168 | ProSitePatterns | Thioredoxin family active site. | 81 | 99 | IPR017937 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00845 | K03671 | thioredoxin |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:21809198 | Sain6g01306 | Sain-Chr6:54046457 | dispersed | |
| Sain | Sain-Chr12:21809198 | Sain13g02464 | Sain-Chr13:134359821 | transposed |