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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00845 ATGGCGATTGCATCTTCTTCTTCTGCTTATCACTCTCTTTTGCCTCACAATCGCAACTGCACACCGCCATCTTTCTCGTTTGCTTCCCCTCGCCAAATTAATGGTTCCTCTGCTATCTCTTTCCGCCCACCCAAAACCCCATCCCCTCTTCGAGTCGTCTCTATGCGACGCCAATCTAAAGCAAAAGTGGTGAGTGGACAGTCATGGGAGGCATCGATTATGGACAGCAAAACACCGGTTCTGGTGGAGTTCTACGCGAGTTGGTGCGGACCATGCCAGATGGTGCACCGTGTGATTGATGAGATCGCGGGTGAGTATGCTGGGAGGCTCAAGTGTTTTGTGCTGAATGCGGATCAAGACCCAGAAATCACAGAGGAATACGAGATCAAGGCTGTGCCCATTGTGCTATTGTTCAAGAATGGTCAGCAATTGGAGTCAGTGGTTGGGACCATGCCCAAAGAATTCTATGTGGCTGCTATTGAAAGGGTTCTTTCATCCTCATCTTGA 507 49.51 MAIASSSSAYHSLLPHNRNCTPPSFSFASPRQINGSSAISFRPPKTPSPLRVVSMRRQSKAKVVSGQSWEASIMDSKTPVLVEFYASWCGPCQMVHRVIDEIAGEYAGRLKCFVLNADQDPEITEEYEIKAVPIVLLFKNGQQLESVVGTMPKEFYVAAIERVLSSSS 168
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00845 168 FunFam Thioredoxin 55 167 - -
Sain12g00845 168 SUPERFAMILY Thioredoxin-like 52 165 IPR036249 -
Sain12g00845 168 Gene3D Glutaredoxin 62 167 - -
Sain12g00845 168 CDD TRX-family 72 161 - -
Sain12g00845 168 ProSiteProfiles Thioredoxin domain profile. 50 165 IPR013766 -
Sain12g00845 168 Pfam Thioredoxin 62 160 IPR013766 -
Sain12g00845 168 PANTHER GEO12009P1 57 164 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Sain12g00845 168 PRINTS Thioredoxin family signature 88 97 - -
Sain12g00845 168 PRINTS Thioredoxin family signature 80 88 - -
Sain12g00845 168 PRINTS Thioredoxin family signature 128 139 - -
Sain12g00845 168 ProSitePatterns Thioredoxin family active site. 81 99 IPR017937 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00845 K03671 thioredoxin
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:21809198 Sain6g01306 Sain-Chr6:54046457 dispersed
Sain Sain-Chr12:21809198 Sain13g02464 Sain-Chr13:134359821 transposed