AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00848 ATGGAGAGAATCAAATTTGGATGCAATGTGTTCTTCACAACAACTCTCTTCGCCACACTTGTCTTGTTCACCTACGCTTCAGCACTCAAGGAAGGACAAACGTGCATAAATAATAACAACTGTGACTCAGGGTTACATTGTGAGGCTTGCGTCGCAGATGGCAATGTTCGTCCTCGGTGTACTCGTATTCAACCTCTAAATCCTTTATCTAAGGTGAAAGGATTGCCATTCAATCGGTACTCGTGGTTAACGACGCACAATTCGTTCGCTAGATTGGGAGAGAAGTCGGATACTGGCTCAATCGTTCTCGCTCCGTCGAACCAGCAGGATACTGTTGGTTCTCAGCTCAATAATGGTGTGAGAGGGCTGATGCTTGATTTGTATGACTTTCAGAATGACATTTGGTTATGTCATTCCTTTGGTGGCAAATGCTTCAACTACACAGCTTTTCAACCGGCTATCAATGTACTGAAAGAGGTTCGAGATTTCCTAGAAAAGAATCCTACTGAAATCGTGACTATAATAATTGAAGATTACGTTACTTCTCGAAATGGTCTAAACAATGTCTTCAACGCTGCTGGTTTGAAGAAATTCTGGTTTCCAGTAGCTCGAATGCCAAGTGATGGCCGTGATTGGCCTACAGTTGACTCCATGGTCAAACAGAATTTGCGCTTGGTAGTTTTCACCTCCAAATCTTCCAAAGAATCAACGGAAGGGATTGCATATGAGTGGAAGTACTTGGTCGAAAACCAATATGGAACTGATGGGATGAAAAGTGGTCTATGCCCTAGTCGTGCAGAGTCAGCTGCTATGAACACTAAATCAAGACCACTGGTTTTGATGAACTACTTTCCAGATACCCCGGATATAACCCAATCTTGCAAGCACAACTCAGCCCCGTTAATAAGCATGCTGAACACATGCCATGATTTAGCCGGCAAACGCTGGCCTAATTTCATTGCTGTCGACTTTTACAAGAGGAGCAACGGTGGGGGTGCACCTGCTGCCGTAGATATGGCCAACGGGCAGCTAGTTTGTGGCTGTAACAACATTGCAGTATGCAGGCCAAACATGACGTTTGGAGTCTGTAACTTACCGGAAGCGGTTGCAGCTCCAGCCCCAACTACAGCTGGGAAAAGCACGACGAATGCGGGTAGTCAACTGGTTCGATCTGATTGGTTGTTTGGCACAGGTTTGATGGCTATCACCTTGTCTTTTGTAAAGCTCATTTAG 1233 45.01 MERIKFGCNVFFTTTLFATLVLFTYASALKEGQTCINNNNCDSGLHCEACVADGNVRPRCTRIQPLNPLSKVKGLPFNRYSWLTTHNSFARLGEKSDTGSIVLAPSNQQDTVGSQLNNGVRGLMLDLYDFQNDIWLCHSFGGKCFNYTAFQPAINVLKEVRDFLEKNPTEIVTIIIEDYVTSRNGLNNVFNAAGLKKFWFPVARMPSDGRDWPTVDSMVKQNLRLVVFTSKSSKESTEGIAYEWKYLVENQYGTDGMKSGLCPSRAESAAMNTKSRPLVLMNYFPDTPDITQSCKHNSAPLISMLNTCHDLAGKRWPNFIAVDFYKRSNGGGAPAAVDMANGQLVCGCNNIAVCRPNMTFGVCNLPEAVAAPAPTTAGKSTTNAGSQLVRSDWLFGTGLMAITLSFVKLI 410
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00848 410 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 76 182 - -
Sain12g00848 410 Gene3D Phosphatidylinositol (PI) phosphodiesterase 66 333 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Sain12g00848 410 CDD PI-PLCc-At5g67130-like 67 341 - -
Sain12g00848 410 PANTHER UNCHARACTERIZED 37 354 IPR051057 GO:0008081(PANTHER)
Sain12g00848 410 SUPERFAMILY PLC-like phosphodiesterases 71 345 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00848 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138845 Sain12g00848 Sain3g00667
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:21839726 Sain5g01404 Sain-Chr5:81399943 dispersed
Sain Sain-Chr11:49252103 Sain12g00848 Sain-Chr12:21839726 wgd
Sain Sain-Chr12:21839726 Sain3g00667 Sain-Chr3:19278488 wgd
Sain Sain-Chr12:21839726 Sain5g01412 Sain-Chr5:81698327 wgd