AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00855 ATGGATGACAACAACAGGGCCCTCCTGGCCCTACTTTCTTCCCTCCTATCGGAGCTCCTCCTCCTACTCTTTCTCATTCCCCCTCCCACCGCCGCCCCCTTTCCCCTCAATTCTCTCCTCATCCCTTTCATCTCCACTTCACAAACCGCCGCCACCCTTTCCCTCCTCTCCAACCGCCGCAAACGCCCCCGATCGCCGGAATCCGATGCACCTGCCGGAGAAACTACCCCCTCCAAACTCGGCCGTCGGGTCGGAGGATCCGACTCACCCATACCAAGAAACCCGGACTCCTTTAAACTCTATTTCAAGATGACTTCTTCAACGTTCGAGTGGCTCTCGGCTCTCCTCGAACCGCTGCTCGAGTGCCGTGACCCGGTTCACTCTCCCTTGAACCTTCCGGTCGAAACTCGACTCGGAATCGGACTGTTTCGACTCGCCACCGGTTCAGATTATTATGAAATTTCACGGCGGTTTAAAGTTTCGGAACCCGTAGCGAAATTTTGCGTCAAACAGTTTTGTCGCGTGTTGTGCACGAATTTCCGGTTCTGGGTCGGGTTCCCTAACCCGAACGAGATCCGATCAATTACTGAATCGTTCGAAAAATTAACAGGTTTGCCCAATTGCTGTGGAGTAATACATTGTACAAGATTTAATATTTTAAAGAACGAGGCTACTGAGGAACCAATTGCTGCTCAATTTGTGGTCGATTCCTCTTCAAAGATTCTCAGCATTATTGTTGCAGGATTTAATGGCAAAAAGGGTAATCATCTTGTTCTTAAATCATCAAGTTTGTATAAAGATATTCAATCAAAGAAAGTGTTAAATTCCCCACCTATAGATATAAATGGTGTATCTATACCTCAATATTTAGTTGGTGAAAAAGGGTACCCTTTTGTTCCATGGTTAATGGTTCCTTTTGATCAGCCTGTGGTGAATAATTCAGATGAAGATAAGTTCAATTGTGCACATAATTTGATGGTTGTTTCTGGGTTTAGAACAGTGGATAGTTTAAAAAAATGGGGTGTTTTGAGTAAGCCAATTAGGGAAGAGATGAAGACTATGGTGGGTTACATTGGTGCTTGTTCTATTCTTCATAATGCTCTGCTTATGAGGGAAGATTACTCTTCGTTATCCGATGAATATTTGCGAGAAACCGACGATAACCGTGGTGATTTTAGTTTTGAAGATAATTTAGTTGAAGAAAAGAGTTTTGAAATTAGAAGTGCATTGGCTACAAGAGCAAGAAGATGTTAA 1254 44.34 MDDNNRALLALLSSLLSELLLLLFLIPPPTAAPFPLNSLLIPFISTSQTAATLSLLSNRRKRPRSPESDAPAGETTPSKLGRRVGGSDSPIPRNPDSFKLYFKMTSSTFEWLSALLEPLLECRDPVHSPLNLPVETRLGIGLFRLATGSDYYEISRRFKVSEPVAKFCVKQFCRVLCTNFRFWVGFPNPNEIRSITESFEKLTGLPNCCGVIHCTRFNILKNEATEEPIAAQFVVDSSSKILSIIVAGFNGKKGNHLVLKSSSLYKDIQSKKVLNSPPIDINGVSIPQYLVGEKGYPFVPWLMVPFDQPVVNNSDEDKFNCAHNLMVVSGFRTVDSLKKWGVLSKPIREEMKTMVGYIGACSILHNALLMREDYSSLSDEYLRETDDNRGDFSFEDNLVEEKSFEIRSALATRARRC 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00855 417 PANTHER UNCHARACTERIZED 89 388 - -
Sain12g00855 417 MobiDBLite consensus disorder prediction 56 92 - -
Sain12g00855 417 Pfam DDE superfamily endonuclease 229 366 IPR027806 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00855 K23222 nuclease HARBI1 [EC:3.1.-.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:22378262 Sain11g00781 Sain-Chr11:18583982 transposed