AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain4g00778 ATGGAAGAATCACGTGATCCGTTTGTTCAGTCTAATGTCGTCGATCCTGCTAACGGGTATAACTCAAGATTCGACCTTGGGCCCCACAACTTCATTGGGCCTGGTTTTCCGGGGTTGAAGAAGCGAGGTCATACTCTTGGAAACCGATCTTGGATAAAAATCGAGCAAAGTGGGAACTCCAAAGTTGTAGAGCTAGACAAGGCTACTGTAATGAGGCATTGTTCTTTGCCAGCTAGAGATCTTCGTCTTTTGGATCCTCTTTTCATTTATCCGTCCACAATATTAGGCCGTGAGAAAGCTATTGTCGTTAATCTTGAGCAGATTAGATGTATAATCACAGCTGATGAGGTATTCCTTATGAATTCTCTGGACGGATCTGTAGTTCAGTACAAATCCGAATTGTGCAAACGTCTTCAGAAAGAGAAATATAACTCAGATGATCTACCATTTGAGTTTAGGGCGTTGGAACTAGCTTTGGAGTTTACATGCCTTACTCTTGATACTCAGGTGAAAGAGTTGGAAATGGAAATTCATCCAGTGCTTGATGAACTAGCAAAATCAATAAGTACTCTCAATCTTGAACGTGTTCGAAGATTCAAAGGCCACCTTCTAGCATTGACTCAACGGGTGCAAAAGGTCTGTGATGAAATAGAACATCTAATGAATGACGATGGAGATATGGCTGAGATGTACCTAACTGAGAAAAAACAAAGGAACTTGTGTAATGATCTATATGATCAAGTACAAGGTAATATTTTAATCGGGCCTGGAGTGGGATTAGGATCAAAATCCGCTCCTGTTTCCCCTGTCGGGTCTGCAAGTGGGTCCCATAAATTGCAAAGGGCATTTAGTAATATAAGTGCACACAGACATGGAAGCTTGTTGAGTTCATCCGCAACTGCTGAAACTGAAAACATTGATCAACTTGAGATGTTGCTGGAAGCGTATTTCGTTGGAATTGACAACACTCTAAACAAGTTGCTTTCGCTCAAGGAATACATCGATGACACTGAAGATCTGATCAACATTAAACTTGGAAATATTCAGAATCAGCTGATTAAGTTCGAGCTGCTTTTGACAGCGGCTACTTTTTTGGCTACCGTTTTTGCTGTCGTCACAGCGGTATTCGGAATGAACTTTGAAGACAACGTTTTCGACGAGCCAAACCGATTCCAGTGGGTCGTTTCTGTCAGCGTGACCTTATGTGGAGTCTTGTATATATGTTTCTTGCTTTATTTTAAATATAAGAAAATTTTCCCTCTGTAG 1266 41.07 MEESRDPFVQSNVVDPANGYNSRFDLGPHNFIGPGFPGLKKRGHTLGNRSWIKIEQSGNSKVVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVNLEQIRCIITADEVFLMNSLDGSVVQYKSELCKRLQKEKYNSDDLPFEFRALELALEFTCLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVCDEIEHLMNDDGDMAEMYLTEKKQRNLCNDLYDQVQGNILIGPGVGLGSKSAPVSPVGSASGSHKLQRAFSNISAHRHGSLLSSSATAETENIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNIQNQLIKFELLLTAATFLATVFAVVTAVFGMNFEDNVFDEPNRFQWVVSVSVTLCGVLYICFLLYFKYKKIFPL 421
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain4g00778 421 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 37 418 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sain4g00778 421 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 358 410 IPR045863 -
Sain4g00778 421 FunFam Magnesium transporter MRS2-1 38 122 - -
Sain4g00778 421 CDD Mrs2-Mfm1p-like 51 418 IPR039204 -
Sain4g00778 421 Pfam Magnesium transporter MRS2-like 58 239 - -
Sain4g00778 421 Gene3D Magnesium transport protein CorA, transmembrane region 359 417 - -
Sain4g00778 421 Gene3D Magnesium transport protein CorA, transmembrane region 125 352 - -
Sain4g00778 421 Gene3D - 41 122 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain4g00778 K16075 magnesium transporter
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr4:21769274 Sain9g00197 Sain-Chr9:4631548 dispersed
Sain Sain-Chr4:21769274 Sain6g00511 Sain-Chr6:13560763 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain3g00815 ACH 47 484 MRS2 gene family AT3G19640 67.473 0.0 568.0
Sain3g04475 . 1 386 MRS2 gene family AT5G09690 66.919 6.59e-179 501.0
Sain4g00778 . 1 421 MRS2 gene family AT2G03620 64.598 1.59e-180 508.0
Sain6g00511 ACH 1 442 MRS2 gene family AT1G16010 83.445 0.0 733.0
Sain7g01870 ACH 1 440 MRS2 gene family AT1G16010 77.753 0.0 669.0
Sain7g02247 . 324 484 MRS2 gene family AT3G19640 63.253 3.98e-66 207.0
Sain9g00197 ACH 1 443 MRS2 gene family AT1G80900 77.629 0.0 692.0
Sain10g00115 . 11 386 MRS2 gene family AT5G09690 73.81 0.0 551.0
Sain10g02607 ACH 123 459 MRS2 gene family AT5G22830 76.923 2.62e-175 497.0
Sain11g01510 ACH 1 459 MRS2 gene family AT5G22830 65.376 0.0 531.0
Sain11g02358 . 342 413 MRS2 gene family AT3G19640 52.0 6.79e-24 92.8
Sain12g01225 . 1 436 MRS2 gene family AT3G58970 66.521 0.0 563.0
Sain13g01945 ACH 47 484 MRS2 gene family AT3G19640 63.261 0.0 544.0