AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain4g00782 ATGGAAGAAGAAATCGACAAGGTGAAGTCTCGAATTATAGTTGAGGAATGGAGTGGTTCTTCTTTGAACAAACTGTCGCTGACCGCTGTCATATCGCCGTCTTCTTCTGCTTCGTCTTTCACCTTGAAAAGACACGGTAATCGGTTCAACATTTTCTCCCGGAGGTTTCTCGAAGCGTTTGTTCCTGAGGGGTTTCCGAGTAGCGTGACTCCAGATTATATTCCTTTTCAGACGTGGGATTTACTGCAGGGCCTTTCAACATACATAAGGACCATGCTTTCTACACAAGCTCTTTTAAGTGCTATAGGAGTCGGGGAGAAATCAGCAACTGTAATTGGGGCTACTTTTCAGTGGTTTTTGAGGGATTTAACTGGAATGCTTGGAGGTGTCATGTTCACATTCTACCAGGGCTCAAACCTAGACAGTGACGCCAAAATGTGGCGTTTGGTTGCAGACCTAATGAATGATCTTGGAATGCTGATGGATCTTCTTTCTCCTTTGTTCCGTTCGGCATTTGTATTCATTGTTTGCATGGGGAGCTTGTCAAGATCTTTCACTGGTGTTGCCAGTGGAGCAACTAGAGCTGCTTTGACCCAGCATTTTGCTCTTCAGAATAATGCAGCAGATATATCTGCAAAGGAAGGAAGCCAGGAGACAGTTGCAACAATGATGGGAATGGCTTTAGGAATGCTTCTTGCGCACATTACAATGGGACACTCAACGATCATATGGTTCTCTTTTCTTTCGCTCACCATGTTCCACATGTATGCTAATTACAAAGCTGTTAGGTGTCTTAATCTGACTACCTTAAACTGTGAAAGAAGCTCCATTCTTTTGCTGCATTTCATGGAGACCGGCCGAGTGCTCTCTCCCGAAGAGGTCTCAGACTTGGAGCATGTCTTACCGTTATGGATAAGTTCTTGGAGCTCAAAGCATACCAAACTTTTGTATACACGGGTACGCTTAGGTGCGAGGGTTTCCTCACTTGACAGCCTGGAAATGATGGAGCTTTTAAGTTCTGCTGGATCTCGATATGAGAAAGCAAAATACATGCTACTTGAGAAGAAAGGAATCGTCAGCCTTATTATGCATAAAGATTCAACTACTGGAGATGTCATGCAGGGGTTCATGCATGCTCTTGTTATGGCAAATCTTCTAGATGATAAGCCTACGTCATTACATATGGATAGCCAAACATGGATGGACAAACACTATGAAGCCTTTGTTTTGAAGCTTCGGTCATCTGGCTGGAAAACGGAGCGCCTTTTGTCTTCGTCAATCATCTGGAGGGCAAACTGGAGCAGTGGGGCTCCAGATAAGAAGATAAACTAG 1332 44.14 MEEEIDKVKSRIIVEEWSGSSLNKLSLTAVISPSSSASSFTLKRHGNRFNIFSRRFLEAFVPEGFPSSVTPDYIPFQTWDLLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVMFTFYQGSNLDSDAKMWRLVADLMNDLGMLMDLLSPLFRSAFVFIVCMGSLSRSFTGVASGATRAALTQHFALQNNAADISAKEGSQETVATMMGMALGMLLAHITMGHSTIIWFSFLSLTMFHMYANYKAVRCLNLTTLNCERSSILLLHFMETGRVLSPEEVSDLEHVLPLWISSWSSKHTKLLYTRVRLGARVSSLDSLEMMELLSSAGSRYEKAKYMLLEKKGIVSLIMHKDSTTGDVMQGFMHALVMANLLDDKPTSLHMDSQTWMDKHYEAFVLKLRSSGWKTERLLSSSIIWRANWSSGAPDKKIN 443
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain4g00782 443 PANTHER RUS1 FAMILY PROTEIN C16ORF58 7 433 IPR006968 -
Sain4g00782 443 Pfam Vitamin B6 photo-protection and homoeostasis 53 285 IPR054549 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain4g00782 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4658434 Sain Sain11g00815 Sain-Chr11:19357594 Sain4g00782 Sain-Chr4:21808845
4664626 Sain Sain13g01499 Sain-Chr13:101368454 Sain4g00782 Sain-Chr4:21808845
4673282 Sain Sain2g01238 Sain-Chr2:79468700 Sain4g00782 Sain-Chr4:21808845
4699040 Sain Sain4g00782 Sain-Chr4:21808845 Sain16g00183 Sain-Chr16:4140883