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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain8g01978 ATGCTGAGAGCCGGAAGCCGAAGGCTGGCTTCTCTCACATCGTCATGGAGGTCTGTCTCCACATCTACTCAGATCCAGGACGCCGCCGACTACGGTCTCCGCTCCACCCATCCCTTCAATCATCTGCTGTCCAGAGGATTTGCTTCAAACTCAATAACCCCACAGTTTGAGGACAAAATTCCACCGACTGTAGCAGCCATCACGAACCCTACATCTAAGATAGTATATGATGAGCATAATCATGAGCGTTACCCACCTGGTGATCCAAGCAAACGAGCATTTGCATATTTTGTGTTGACAGGTGGTAGGTTTGTGTACGCCTCCCTGATCCGGCTTCTGGTCCTCAAATTTGTTCTAAGCATGTCTGCCAGCAAAGATGTTCTTGCACTGGCCTCTCTTGAGGTTGATCTTTCTAGCATTGAGCCTGGAACAACGGTGACAGTGAAATGGCGTGGAAAGCCGGTGTTTATCAGGCGGCGAACAGAGGACGATGTGAAGCTTGCAAACAGCGTGGATATATCATCTCTTCGTGATCCACAGGAGGATGCTGCCAGGGTGAAGAATCCAGAATGGCTTATTGTGGTTGGCGTATGTACCCATTTGGGTTGCATCCCGTTGCCAAATGCTGGTGATTTTGGGGGGTGGTTTTGCCCTTGTCATGGTTCTCACTACGACATCTCTGGGAGGATTCGCAAGGGTCCAGCACCCTACAACTTGGAGGTGCCCACTTACAGTTTCTTTGATGAGAACAAGTTGCTGATTGGATGA 768 49.74 MLRAGSRRLASLTSSWRSVSTSTQIQDAADYGLRSTHPFNHLLSRGFASNSITPQFEDKIPPTVAAITNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDVKLANSVDISSLRDPQEDAARVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFFDENKLLIG 255
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain8g01978 255 PRINTS Rieske 2Fe-2S subunit signature 215 227 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Sain8g01978 255 PRINTS Rieske 2Fe-2S subunit signature 193 204 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Sain8g01978 255 PRINTS Rieske 2Fe-2S subunit signature 227 239 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Sain8g01978 255 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 60 255 IPR014349 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Sain8g01978 255 Pfam Ubiquinol cytochrome reductase transmembrane region 87 126 IPR004192 GO:0008121(InterPro)
Sain8g01978 255 Pfam Rieske [2Fe-2S] domain 185 240 IPR017941 GO:0051537(InterPro)
Sain8g01978 255 Gene3D - 124 255 IPR036922 GO:0051537(InterPro)
Sain8g01978 255 SUPERFAMILY ISP domain 117 253 IPR036922 GO:0051537(InterPro)
Sain8g01978 255 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 165 253 IPR017941 GO:0051537(InterPro)
Sain8g01978 255 CDD Rieske-cytochrome-bc1 132 255 - -
Sain8g01978 255 SUPERFAMILY ISP transmembrane anchor 72 128 - -
Sain8g01978 255 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 111 255 IPR006317 GO:0008121(InterPro)
Sain8g01978 255 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 125 255 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain8g01978 K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr10:158939783 Sain8g01978 Sain-Chr8:132376945 wgd