AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain8g01991 ATGGCGTCAGCTGCATACCTTTGTGGGGTTACGACTCCCAATCATTTTTCCATCAGACCTTTGCACTCCCGATCCTTTTGCTCACATCAATCGCTCATTCTTGCCTCATTCGTTGGATCTCGTAGACCGATCCAGGCTCCAATTTCATGTGATGGAAGAGGTTTGAGGGTTATTTGTAATGTGCAAAACGTGGATGTGCTCACCAGGAGTGAGAGTGAACCCGGAAGTCAAGCTTCACAAGGATTAATCAAAGAGTTATCATGTGTGATGAAGTTTGGTGGATCATCTTTGGCCTCAGCAGAAAGGATGAAACAAGTAGCTCACCTCATCCTCAGCTTCCCTCAAGAGACTCCTGTCATTGTCCTCTCTGCTATGGGCAAAACCACCAACAAGCTCTTAATGGCTGGCGAGAAGGCTGCAAGTTGTGGTTCTGCTGTGACTGAAATTGATGAATTGAGCTTTGTGAAAGAACTACACCATAGGACAGTAGATGAGCTTGGACTAGAAAAAACACTCATTACAGACCACCTAGAAAAATTAGAGCGACTTCTGAATGGGATTGCAGTACTAAAAGAGTTCACACCACGTGCAAAAGACTATCTAGTCTCATTTGGGGAGTGCATGTCCACAAGAATATTTTCTGCATACTTGAATAAAATTGGTGTGAAAGCACGCCAATACGATGCATTCGAAATGGGTTTCATAACAACAGATGACTTTACTAATGCGGATATTTTGGAAGCAACTTATCCTGCTGTAGCAAAGAGACTACGTGGTGATTGGATTAAGGATCCTGCGATTCCTATTGTCACTGGCTTCCTTGGAAAGGGTTGGAGAACTTGTGCTGTGACTACATTGGGCAGAGGTGGTAGTGATTTAACTGCCACAACCATTGGTAAAGCACTTGGTTTGCGAGAAATTCAGGTATGGAAAGATGTGGATGGTGTCTTGACATGTGACCCTAATATATATTCAGGTGCAGAACCTGTGCCATATTTGACTTTCGATGAGGCAGCTGAACTTGCATATTTTGGTGCCCAGGTCCTACATCCACAGTCTATGAGGCCGGCAAGAGAGGGTGATATACCTGTTAGGGTTAAAAATTCTTACAACCCTAATGCTCCAGGTACCCTAATTACTAAATCAAGAGATATGAGTAAGGCAGTATTAACCAGCATTGTTTTGAAACGTAATGTAACTATGTTAGACATTGTTAGTACACGCATGCTGGGTCAATTTGGATTCCTCGCTAAGGTGTTTTCGATTTTCGAGGATCTGGGTATATCTGTAGATGTTGTAGCTACTAGTGAAGTTAGCATTTCCTTGACGTTAGATCCTTCGAAGCTTTGGAACAGGGAGTTGATTCAGCAGGAACTCGATCATGTTGTGGAAGAGCTTGAAAAAATTGCTAAAGTGAATCTTCTTCAGCACAGATCGATTATTTCGCTCATTGGGAATGTTCAGAGATCCTCACTTGTATTGGAGAAGGCATTCCGTGTTCTTCACATGAATTCAGTGAATGTTCAGATGATATCCCAAGGAGCATCGAAGGTGAATATATCTCTGATAGTAAATGACAGTGAAGCGGAAAGATGTGTGAAAGCCCTGCATTCGGCTTTCTTTGAGGAGGGTGATATCTCTGACATTGACCAAGGCCATTAG 1662 42.9 MASAAYLCGVTTPNHFSIRPLHSRSFCSHQSLILASFVGSRRPIQAPISCDGRGLRVICNVQNVDVLTRSESEPGSQASQGLIKELSCVMKFGGSSLASAERMKQVAHLILSFPQETPVIVLSAMGKTTNKLLMAGEKAASCGSAVTEIDELSFVKELHHRTVDELGLEKTLITDHLEKLERLLNGIAVLKEFTPRAKDYLVSFGECMSTRIFSAYLNKIGVKARQYDAFEMGFITTDDFTNADILEATYPAVAKRLRGDWIKDPAIPIVTGFLGKGWRTCAVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIYSGAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITKSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWNRELIQQELDHVVEELEKIAKVNLLQHRSIISLIGNVQRSSLVLEKAFRVLHMNSVNVQMISQGASKVNISLIVNDSEAERCVKALHSAFFEEGDISDIDQGH 553
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain8g01991 553 FunFam Aspartokinase 400 471 - -
Sain8g01991 553 Gene3D - 89 379 IPR036393 -
Sain8g01991 553 ProSitePatterns Aspartokinase signature. 89 97 IPR018042 GO:0004072(InterPro)|GO:0008652(InterPro)
Sain8g01991 553 Pfam ACT domain 481 540 IPR054352 -
Sain8g01991 553 PANTHER ASPARTATE KINASE 86 542 - GO:0004072(PANTHER)|GO:0005829(PANTHER)|GO:0009089(PANTHER)|GO:0009090(PANTHER)|GO:0009570(PANTHER)
Sain8g01991 553 FunFam Aspartokinase 1 472 541 - -
Sain8g01991 553 CDD ACT-AK1-AT-1 399 476 IPR047896 -
Sain8g01991 553 Gene3D - 391 541 - -
Sain8g01991 553 SUPERFAMILY ACT-like 469 543 IPR045865 -
Sain8g01991 553 ProSiteProfiles ACT domain profile. 404 477 IPR002912 -
Sain8g01991 553 Gene3D Aspartokinase, catalytic domain 126 221 IPR042199 -
Sain8g01991 553 Gene3D - 400 475 - -
Sain8g01991 553 SUPERFAMILY ACT-like 388 486 IPR045865 -
Sain8g01991 553 NCBIfam aspartate kinase 89 542 IPR001341 GO:0004072(InterPro)|GO:0008652(InterPro)
Sain8g01991 553 FunFam Aspartokinase 192 379 - -
Sain8g01991 553 FunFam Aspartokinase 126 221 - -
Sain8g01991 553 Pfam Amino acid kinase family 88 368 IPR001048 -
Sain8g01991 553 SUPERFAMILY Carbamate kinase-like 89 382 IPR036393 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain8g01991 K00928 aspartate kinase [EC:2.7.2.4]
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Event-related genes

Select Gene_1 Gene_2 Event_name
138219 Sain11g01562 Sain8g01991
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr11:39188944 Sain8g01991 Sain-Chr8:133249854 dispersed
Sain Sain-Chr16:1208765 Sain8g01991 Sain-Chr8:133249854 dispersed
Sain Sain-Chr16:1209745 Sain8g01991 Sain-Chr8:133249854 dispersed
Sain Sain-Chr7:89115212 Sain8g01991 Sain-Chr8:133249854 dispersed