AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain8g02008 | ATGGAGGCAGATCAAGATCCATCAACGACACCAAACTTCCACCTCCATGACGATACACTCACCCAACAGATTGATCGATTCATCTCTTCATCATCATCAACACCCGCCGATGATGAGCATGATGATGATCCAGATCCACCTGATCATCAGATATTGGAATCCGTTCAATGTTTTTCCCTTCTTTTTGATGAAGAGGTCGTCCAATACGAATCAGGTTCCAAGAAATGGGCACAGGATGAATCGTCTTCTTTCATAATATCCGTTGAACGCACATCCAAGCTTCTCAATTCTATATCCAGATTTCAATCCCAACGAGATTACGCCTCTGCTTTCAACCAGATCAGTGGTATTCAGCAACGTGCATTGTCTTTCATGGAGGATGAATTCAAGTCCATTCTCGATGATTACCAGACTTCACACGATCGAGATCAAAAGAATATAAATATTGATGAGGCTGCAGCAGCAGCAGCAGCAGCAGCGTCGTCGATGTCTCCTTCCCATGATCAATCCAATTCGGATGATCAACCCGTCGTGGATGATCAGTATGAGGACAATTTTCTAGGATATTCGGACGAGATGATATCAAATCTCAATAAATTAGCCACGGGATTGATAGGAGGAGGTCACCAGACAGAGTGTAGTGAAATTTATTTCTTTGTTCGAAGAAATGCAATCGAACAGAACTTGAAGCTTCTTCCCTTTGAAAAATACTCCATCGACGAGATGCAGAAGATGCAGTGGGAGCCTATAGAGAAAGAGGTTTCTGCATGGACCAAGATGTTCAAAGACTATACAACCTCGCTCCTCCCTAGCGAGCGGAGGCTAGTAGACGCCGTCTTCTCCTCCTCCGCCATCTCCGACAGCTTATTTGGTAACCTAGCACGAATCGTCCTATTTTACTTTCTCACCTTTGCAGAAGCCGTTATGATGACGAAACGAGCGGCTGAGAAACTGTTCAAGTTTCTAGACATTTACGAGACATTACGTGACAGCATCCCGGAGGTGGAGAAATATCTTTCCGATGACTGGTTACTCCAACTCAGATCCGCCGCCTCGTTGATTAATAACATGCTAGGGGATGCTATTTTCACCATTTTCGCAGAGCTTGAGAACTCGATCAAGGGAGATACATCCAAGACGCCGGTTCCGGGCGGAGCAGTACACCCTCTAACTCGCTACACCATGAATTATCTGAAATTAGCCTGCGAGTACAGGGACACATTGCAGCAAGTATTCAGAGAACATAAAAAGATAGATCGAGCGGACTCGTCCGATTGCGATCCGAGTTCTTCTCAAGAGCTTATAACACAGAACCCTGATGATCCGCATGAATCGTCGTCATTCCAGTTGCAATTGGCGAGAGTGATGGATCTATTGGATGCAAACCTGGAAGCGAAATCAAAGCTGTACAAAGATCCGTCGTTGAGCTTGATCTTCCTGATGAACAACGGACGGTACATATTGCAGAAGACAAAGGGAACCGGTGAGATGAGGAGCTTGATGGGGGATCCATGGGTGAGGAAACGGTCGTCGGATCTGAGGAGTTACCACACCAACTACAAGAGAGAAACATGGACGAAGCTATTGCAGTGTCTGAGTCACGAAGGATTGAGCGTGAACGGGAAGGTGATGAAGCCGGTGCTGAAGGAGAGGTTCAAGAGTTTCAACGCCATGTTCGACGAGATACATAGAACACAAACCACATGGGTGGTGAGTGACGAACAGCTTCAGTCAGAACTGAGGGTGTCGATATCGGCGATAGTAATTCCGGCGTATAGGTCGTTTATGGGGAGGTTCAGTCAGGTGTTCACTCCGGGAAGGCAAACGGAGAAGTACATAAAATATCAGCCGGAAGATATAGAAACATGTATCGAAGAGCTGTTTGATGGGAATGCAGCGCAGCAAGGCAAGAAGAGATGA | 1920 | 46.09 | MEADQDPSTTPNFHLHDDTLTQQIDRFISSSSSTPADDEHDDDPDPPDHQILESVQCFSLLFDEEVVQYESGSKKWAQDESSSFIISVERTSKLLNSISRFQSQRDYASAFNQISGIQQRALSFMEDEFKSILDDYQTSHDRDQKNINIDEAAAAAAAAASSMSPSHDQSNSDDQPVVDDQYEDNFLGYSDEMISNLNKLATGLIGGGHQTECSEIYFFVRRNAIEQNLKLLPFEKYSIDEMQKMQWEPIEKEVSAWTKMFKDYTTSLLPSERRLVDAVFSSSAISDSLFGNLARIVLFYFLTFAEAVMMTKRAAEKLFKFLDIYETLRDSIPEVEKYLSDDWLLQLRSAASLINNMLGDAIFTIFAELENSIKGDTSKTPVPGGAVHPLTRYTMNYLKLACEYRDTLQQVFREHKKIDRADSSDCDPSSSQELITQNPDDPHESSSFQLQLARVMDLLDANLEAKSKLYKDPSLSLIFLMNNGRYILQKTKGTGEMRSLMGDPWVRKRSSDLRSYHTNYKRETWTKLLQCLSHEGLSVNGKVMKPVLKERFKSFNAMFDEIHRTQTTWVVSDEQLQSELRVSISAIVIPAYRSFMGRFSQVFTPGRQTEKYIKYQPEDIETCIEELFDGNAAQQGKKR | 639 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain8g02008 | 639 | Gene3D | Exocyst complex component Exo70 | 64 | 638 | - | - | |
| Sain8g02008 | 639 | MobiDBLite | consensus disorder prediction | 158 | 178 | - | - | |
| Sain8g02008 | 639 | SUPERFAMILY | Cullin repeat-like | 78 | 629 | IPR016159 | - | |
| Sain8g02008 | 639 | MobiDBLite | consensus disorder prediction | 162 | 176 | - | - | |
| Sain8g02008 | 639 | MobiDBLite | consensus disorder prediction | 427 | 447 | - | - | |
| Sain8g02008 | 639 | Pfam | Exo70 exocyst complex subunit C-terminal | 256 | 626 | IPR046364 | GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro) | |
| Sain8g02008 | 639 | PANTHER | EXOCYST COMPLEX PROTEIN EXO70 | 73 | 631 | IPR004140 | GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER) | |
| Sain8g02008 | 639 | MobiDBLite | consensus disorder prediction | 25 | 50 | - | - | |
| Sain8g02008 | 639 | Pfam | Exocyst complex component Exo70 N-terminal | 78 | 134 | - | - | |
| Sain8g02008 | 639 | MobiDBLite | consensus disorder prediction | 419 | 447 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain8g02008 | K07195 | exocyst complex component 7 |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 140604 | Sain5g01921 | Sain8g02008 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr8:4346805 | Sain8g02008 | Sain-Chr8:134340648 | dispersed | |
| Sain | Sain-Chr8:134340648 | Sain9g03834 | Sain-Chr9:207621034 | dispersed | |
| Sain | Sain-Chr8:134340648 | Sain3g03842 | Sain-Chr3:221713577 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Sain1g01413 | . | 172 | 229 | EXO70 exocyst subunit family | AT3G09520 | 65.517 | 1.56e-20 | 81.6 | |
| Sain2g01374 | . | 9 | 684 | EXO70 exocyst subunit family | AT4G31540 | 69.822 | 0.0 | 980.0 | |
| Sain3g00306 | ACH | 25 | 633 | EXO70 exocyst subunit family | AT1G72470 | 65.811 | 0.0 | 792.0 | |
| Sain3g00839 | . | 9 | 97 | EXO70 exocyst subunit family | AT4G31540 | 68.539 | 2.92e-34 | 122.0 | |
| Sain3g03842 | . | 1 | 624 | EXO70 exocyst subunit family | AT5G58430 | 63.199 | 0.0 | 790.0 | |
| Sain4g00396 | . | 66 | 644 | EXO70 exocyst subunit family | AT5G13150 | 40.034 | 1.28e-147 | 441.0 | |
| Sain4g01213 | ACH | 1 | 638 | EXO70 exocyst subunit family | AT5G03540 | 78.227 | 0.0 | 997.0 | |
| Sain4g03140 | . | 172 | 229 | EXO70 exocyst subunit family | AT3G09520 | 65.517 | 1.56e-20 | 81.6 | |
| Sain5g01647 | ACH | 9 | 658 | EXO70 exocyst subunit family | AT3G29400 | 46.799 | 0.0 | 573.0 | |
| Sain6g00024 | ACH | 16 | 633 | EXO70 exocyst subunit family | AT1G72470 | 66.352 | 0.0 | 827.0 | |
| Sain6g00236 | . | 12 | 629 | EXO70 exocyst subunit family | AT4G31540 | 28.943 | 1.19e-74 | 253.0 | |
| Sain7g01704 | . | 24 | 682 | EXO70 exocyst subunit family | AT5G50380 | 57.973 | 0.0 | 737.0 | |
| Sain7g02205 | ACH | 23 | 633 | EXO70 exocyst subunit family | AT1G72470 | 66.72 | 0.0 | 810.0 | |
| Sain7g02262 | . | 12 | 675 | EXO70 exocyst subunit family | AT4G31540 | 45.19 | 0.0 | 560.0 | |
| Sain8g00234 | ACH | 8 | 632 | EXO70 exocyst subunit family | AT5G03540 | 77.445 | 0.0 | 989.0 | |
| Sain8g02008 | ACH | 78 | 684 | EXO70 exocyst subunit family | AT5G13990 | 47.385 | 0.0 | 553.0 | |
| Sain8g02385 | ACH | 5 | 658 | EXO70 exocyst subunit family | AT3G29400 | 47.662 | 0.0 | 570.0 | |
| Sain8g02386 | ACH | 5 | 652 | EXO70 exocyst subunit family | AT3G29400 | 41.641 | 1.56e-155 | 461.0 | |
| Sain8g02388 | . | 9 | 652 | EXO70 exocyst subunit family | AT3G29400 | 40.644 | 7.03e-145 | 433.0 | |
| Sain9g03648 | . | 9 | 144 | EXO70 exocyst subunit family | AT3G29400 | 37.589 | 3.61e-19 | 81.3 | |
| Sain9g03834 | . | 51 | 653 | EXO70 exocyst subunit family | AT5G13150 | 45.972 | 1.13e-172 | 506.0 | |
| Sain10g02118 | . | 6 | 631 | EXO70 exocyst subunit family | AT5G52340 | 70.111 | 0.0 | 923.0 | |
| Sain11g00805 | . | 1 | 611 | EXO70 exocyst subunit family | AT2G39380 | 47.021 | 3.32e-171 | 500.0 | |
| Sain11g01262 | . | 32 | 608 | EXO70 exocyst subunit family | AT3G09520 | 52.405 | 0.0 | 591.0 | |
| Sain11g01268 | . | 32 | 608 | EXO70 exocyst subunit family | AT3G09520 | 53.265 | 0.0 | 602.0 | |
| Sain15g00808 | . | 11 | 599 | EXO70 exocyst subunit family | AT5G59730 | 49.664 | 0.0 | 563.0 | |
| Sain15g00810 | . | 11 | 599 | EXO70 exocyst subunit family | AT5G59730 | 49.324 | 0.0 | 560.0 | |
| Sain15g00811 | . | 11 | 599 | EXO70 exocyst subunit family | AT5G59730 | 49.324 | 0.0 | 560.0 | |
| Sain15g01046 | . | 1 | 624 | EXO70 exocyst subunit family | AT5G58430 | 60.252 | 0.0 | 754.0 |