AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain8g02015 ATGGAAGATGAATATGCAAAACTTATTAGGAGAATGAACCCCCCCAGAGTTAAAATCGACAACAACACTTCTCCAGATGCAACACTTATCCAGGTTGAAAGTGTTAACAAGCATGGTATTCTACTGGAAGTTGTCCAAGTTCTTGCGGATTTAGATCTCATCATCAAAAAAGCATATATCTCATCTGATGGAGGCTGGTTCATGGATGTGTTCAATGTCATCTGCCAAGACGGAATCAAAATCAGAGATGAAGGAATGATCGATTACATAACAAAGGTGCTTGAAAATGATGCATTTTATGTTCCATCACTGAATGGTTCAGTTGGATTGAAACCTTCTGAAGATTACACCGCAATCGAATTAGCTGGAACAGATAGACCTGGTTTATTATCTGAAGTGTCTGCAGTTCTAACGGGCCTTGGATGTAACGTGGTCAATGCTGAAATATGGACCCACAATGCTCGAGCTGCAGCCGTGGTTCATGTCACAGATGATAACACCAGATGTGCAGTGGAAGACCCAAAGAGGCTCTCAACTATAGAAAAACTGCTTTCTAATGTTCTCAAGGGAAACAATGACTTGAAGGCTGCAAAAATGACACCTGGTTTCACACACAGACAGAGAAGGTTGCATCAGATCATGTTTGCTGAAAGGGACTACGAAAAGTCTGAACAAGAAGAAAAGGAAAATGGATCAAGGCCACAGGTTGCTGTTTTAGATTGTGCTGAGAAAGGTTACACGATTATTACTATGCGGTGTAGGGATCGGCCAAAGCTGTTGTTTGATACTATCTGCACTTTAACTGATATGCAATATGTAGTGTTCCATGGAGTGGTTCACACAGGGAAGATGGAAGCTTATCAGGAATATTATATTCGACATGTTGATGGGACCCCGTTAAGCTCAGAGGCAGAGCGAGAGCGTGTTATGCAATGTCTGGAAGCTGCAATTGAGAGGAGGACGTCTGAAGAGGCAGTAGAGCTAGAATTGTGCACAGAGGACCGTGTTGGACTTCTTTCTGATATAACCAGGATATTTAGAGAAAATAGTTTGTGTATAAAAAGAGCAGAGATTACAACTCAAGGTGGAAAGGCAAAGGACAAATTTTATGTGACGGACATGACTGGTAATGGCCCTGTGGACCCCAAGAGTATAGATTCCATCCGAAGAGAAATGGGGCAACACACGACGCTCGATGTTAGATGGAAGTGTAGTGAATTAGAGAAGCCACCACCTGAAGAAACAAAAACGAGCTTTCTGTTTGGAAACCTGTTCAGATCCTACTCATGA 1290 42.17 MEDEYAKLIRRMNPPRVKIDNNTSPDATLIQVESVNKHGILLEVVQVLADLDLIIKKAYISSDGGWFMDVFNVICQDGIKIRDEGMIDYITKVLENDAFYVPSLNGSVGLKPSEDYTAIELAGTDRPGLLSEVSAVLTGLGCNVVNAEIWTHNARAAAVVHVTDDNTRCAVEDPKRLSTIEKLLSNVLKGNNDLKAAKMTPGFTHRQRRLHQIMFAERDYEKSEQEEKENGSRPQVAVLDCAEKGYTIITMRCRDRPKLLFDTICTLTDMQYVVFHGVVHTGKMEAYQEYYIRHVDGTPLSSEAERERVMQCLEAAIERRTSEEAVELELCTEDRVGLLSDITRIFRENSLCIKRAEITTQGGKAKDKFYVTDMTGNGPVDPKSIDSIRREMGQHTTLDVRWKCSELEKPPPEETKTSFLFGNLFRSYS 429
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain8g02015 429 SUPERFAMILY ACT-like 323 394 IPR045865 -
Sain8g02015 429 ProSiteProfiles ACT domain profile. 118 201 IPR002912 -
Sain8g02015 429 Pfam ACT domain 119 166 IPR002912 -
Sain8g02015 429 CDD ACT-ACR-2 117 190 - -
Sain8g02015 429 ProSiteProfiles ACT domain profile. 327 405 IPR002912 -
Sain8g02015 429 ProSiteProfiles ACT domain profile. 29 109 IPR002912 -
Sain8g02015 429 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 7 403 IPR040217 -
Sain8g02015 429 SUPERFAMILY ACT-like 113 188 IPR045865 -
Sain8g02015 429 SUPERFAMILY ACT-like 25 94 IPR045865 -
Sain8g02015 429 CDD ACT-ACR-3 246 320 - -
Sain8g02015 429 Gene3D - 114 190 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain8g02015 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr4:11830696 Sain8g02015 Sain-Chr8:134954839 dispersed
Sain Sain-Chr6:50588529 Sain8g02015 Sain-Chr8:134954839 dispersed
Sain Sain-Chr8:134954839 Sain9g03690 Sain-Chr9:203677714 dispersed
Sain Sain-Chr10:158275447 Sain8g02015 Sain-Chr8:134954839 wgd