AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain8g02016 ATGGGAACCGAGACTCCACCCAGATCTTCCGGTGAAATATCGGAACCCTTTCTCGACGAATCATCCTATTCCCAATCAGATTTAGAAGAAACCATACCCGAATGGAAAGATCAGATCACCTTCAGGGGTTTAGTTGTTAGTGCTTTGTTGGGGACGCTTTTTTGTATCATCACCCACAAGCTCAATCTCACCGTCGGGATCATCCCTTCTTTAAACGTCGCAGCTGGTTTGCTCGGATTCTTCTGTGTCAAATCATGGACTACTTTCCTCCAAAAGTTTGGCTTTTCTGTTCAGCCGTTCACCAGGCAAGAGAACACTGTTATCCAGACTTGCGTTGTTGCTTGCTATGGCCTTGCTTTCAGCGGCGGATTTGGGTCATATTTGCTTTCAATGGATGAAAGAACCTACAATTTGATTGGTGCTGATTACCCTGGTAATCGGGCGGAAGATGTTAAGAACCCAGGGTTATTGTGGATGATAGGTTTCATTTTTGTTGTCAGTTTTCTTGGCCTTTTCAGTCTTGTCCCACTTCGCAAGGTCATGGTAATGGATTATAAACTTACATACCCTAGTGGAACCGCCACGGCCATGTTGATAAATAGTTTTCACACTACTACAGGCGCTGAGCTTGCAAGGAAGCAAGTAAGCTCTCTTGGAAAGTATTTGAGCATAAGTTTTGTCTGGAGTTGCTTCAAATGGTTCTTCAGCGGTGTTGGGGATTCATGTGGTTTTGATAATTTTCCTAGTTTGGGCTTGATGCTGTTCAAGAACACATTTTACTTTGACTTCAGTCCTACTTATGTTGGATGTGGTCTTATTTGCCCTCACATAGTCAACTGCTCGGTTCTTTTTGGAGCTATTATATCATGGGGCGTTCTTTGGCCCTTCATTACTACACGTGCAGGGGATTGGTATCCAGCTGATCTTGGCACCAATGACTTCAAAGGTCTTTATGGGTACAAGGTATTTATAGCCATTGCCCTTATTCTTGGAGATGGTCTTTACAATCTGATTAAGATAATAGCCATCTCCATTAAGGCAGTGTGGAACAACAAAACCAAACATCAAGATCTCCCTGTAATGAAAGAGATTGTAGATTCTGATACTTCCAAATTGACATCCAAATCACAAGTTGAGGACCAGAAAAGAGATGCTGTTTTCTTAAAAGACAGTATACCGACGTGGTTTGCAGCCTCTGGGTATGTGGTCCTGGTTGGCATATCCATGGCCACGATGCCACTTATTTTTCCACCTCTGAAATGGTACCTGGTTCTGTGCTCTTACATTATTGCCCCTGCCCTTGCTTTCTGCAACTCGTACGGAACTGGTCTCACCGACTGGAGCCTGGCTTCAACATATGGCAAAATCGGCCTTTTCATCATCGCATCATTGGTCGGAACCAACGGGGGCGTCTTGGCTGGGTTAGCAGCATGCGGGGTCATGATGTCTATCGTCTCAACCGCTGCTGATTTGATGCAAGATTTCAAGACGGGTTACCTGACGTTATCGTCCGCTAAATCCATGTTTGTGAGCCAGTTAGTGGGGACCGCCATGGGATGCATCATCGCGCCACTCACGTTTTGGATGTTTTGGTGTGCGTTTGAGATTGGGACACCGGATAGTCCTTACAAGGCTCCGTATGCTGTGATATATCGCGAAATGGCGATTCTCGGAGTGGAGGGATTCTCGGAGCTCCCGAAGCATTGCTTGGGTTTGTGCTGCGGGTTTTTTGTGTTGGCGTTGGGTTTAAACTTGGTGAGGGATTGGTGTCCGCGAAAGGTGGCGGGGTTCATTCCGATTCCGATGGCAATGGCGGTGCCGTTTTATATTGGAGCTTATTTTGCTATTGATATGTTTGTTGGGACGGTGATTCTGTTTGTGTGGGAGCGGGTGAATAAGAAGGATGCGGAGGATTATGCAGGGGCAGTTGCTTCGGGTTTAATATGTGGAGATGGGATATGGACGATACCCTCAGCTATACTCTCGATTCTCAGGGTTGATCCACCCATCTGCATGTATTTCGGGCCTTCGGTTACCAAATGA 2043 45.96 MGTETPPRSSGEISEPFLDESSYSQSDLEETIPEWKDQITFRGLVVSALLGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFCVKSWTTFLQKFGFSVQPFTRQENTVIQTCVVACYGLAFSGGFGSYLLSMDERTYNLIGADYPGNRAEDVKNPGLLWMIGFIFVVSFLGLFSLVPLRKVMVMDYKLTYPSGTATAMLINSFHTTTGAELARKQVSSLGKYLSISFVWSCFKWFFSGVGDSCGFDNFPSLGLMLFKNTFYFDFSPTYVGCGLICPHIVNCSVLFGAIISWGVLWPFITTRAGDWYPADLGTNDFKGLYGYKVFIAIALILGDGLYNLIKIIAISIKAVWNNKTKHQDLPVMKEIVDSDTSKLTSKSQVEDQKRDAVFLKDSIPTWFAASGYVVLVGISMATMPLIFPPLKWYLVLCSYIIAPALAFCNSYGTGLTDWSLASTYGKIGLFIIASLVGTNGGVLAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLVGTAMGCIIAPLTFWMFWCAFEIGTPDSPYKAPYAVIYREMAILGVEGFSELPKHCLGLCCGFFVLALGLNLVRDWCPRKVAGFIPIPMAMAVPFYIGAYFAIDMFVGTVILFVWERVNKKDAEDYAGAVASGLICGDGIWTIPSAILSILRVDPPICMYFGPSVTK 680
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain8g02016 680 NCBIfam OPT family oligopeptide transporter 35 658 IPR004813 GO:0035673(InterPro)
Sain8g02016 680 Pfam OPT oligopeptide transporter protein 38 661 IPR004813 GO:0035673(InterPro)
Sain8g02016 680 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 22 676 IPR045035 GO:0016020(PANTHER)|GO:0035673(InterPro)
Sain8g02016 680 MobiDBLite consensus disorder prediction 1 22 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain8g02016 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr10:160763336 Sain8g02016 Sain-Chr8:134958072 dispersed
Sain Sain-Chr5:3878641 Sain8g02016 Sain-Chr8:134958072 dispersed
Sain Sain-Chr8:134958072 Sain8g03127 Sain-Chr8:183228497 transposed