AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain8g02064 ATGTTAATGGGATCGACGACAAAAAACAAGAAAAGCCCGTATGTCCAACTTGATTATGTCATCAATCTTGTAGAGATTAAGCCTTGGCCTCCATCTCAGTCATTAAGATCACTTCGATCCGCATTGATACAATGGGAATACGATAACAAAATTTCAGGGTCTACTAAAGCAGTTACTCCTTCAATCGTTTCAGGTTTGAGTGTCGGTGACGGTAAAATTGAATTCAACGAATCTTTTAGGCTTCACGTGACGTTATCGAGAGATATGTCAATTAAGGCTGGAGACACCGAAACTTTCCTAAGGAATTGTATAGAGTTTAATTTGTACGAACCTCGAAGGGACAAAACGGTAAAAGGGCAGTTGTTGGCTACTGCAATCGTGGATTTTGCCGAGTATGGTATTGTGAAAGATAGTTTGATGATCAGTGTGCCTATGACATGCAAACGGACTTTTGGTAACACCGCTCAACCTATGCTCTTCGTTAAAATGCAGACTTCTGAAAGAAATAATCGTGTGAGGTCTTCATCGGGTGATGGCTTAATCAGAGAAGGATCGTTGGAGAAGAGCTATTCGGAGTCTGTTTCCGCTTTGATGAAAGAAGAGTATGCTGAGGAAGCCGAGAATGCTTCCGTTACCGATGATGATATTTCCTCCCAGTCTTCCATGGCTGCTGCTTCTTCAACCTTTGGATCCACTGGGAATTTAAGTCCTCAAAGAGAGAACGGATCAGAGGCGATATCTGGAAGCTCGAGAAACGTTAATGATCAAGAAGTGTTGGTTCAAGATAAAAGGGTCGCTGAATCCTTATCATCAACAGATTTGTATACTGAAATAATAAATGCTCGTACCACTCTATCAAATCTACGTAACTCAAGATTCACAATGCTACCAGAGAAAGCTGAATCTTACAACGTGAAACTATCAAAGTTGTCTATTGCTAATGATAACGGAAACTCTAGAAACGTAGCTTATGTCAATCTGCATGAGAAAGTTCCTAAAAGGGCCATGGAATCTCAGATGTATGAGGTGGACGATGAACAATCTTGTATACGGTTAAAAAATCCGAATGCAAGTCAAAGTGGACGAGAAAGTCAAATCATTGGAGATCTTGGATCAGATGTTTTACATGCTGATAGATTACAGAACACGAAGTCTGTTAGTTCTTCGTTGGATTCACGATATAGCAATGGATCAGACGTTTTACTTGATCGATTAAAGAATTTGAAGCCCGTTAGTTCTTCATTAGATTCCGGTTTTAGCAATGGATCAGACGTTTTACTCGATAGATTAAAGAATTTGAAGCCTGTTGGAGCTTCGTTGGATTCGGATTTTAGCAACGGGTCTGTAAGGAGTGGCAAAGTTTTAGACAAATTCAAAAAGGTCGGTGTAAGCAAGGTACAAGACTTGGAACAGAGGGTACAAGCTCTTGAAGGGGAGCTGAGAGAAGCTGCCGCTATTGAGGTTAGTCTTTACTCGGTAGTTGCAGAGCACGGGAGTTCCATTCATAAAGTCCATGCCCCCGCACGGCGTCTTTCTAGGCTGTACCTTCATGCATACAAAGAGAACTCTCAGTCTCGGAGAGCAACTTCAGGAAGAAGTATTGTGTCGGGATTGATTTTAGTCGCAAAAGCTTGTGGAAATGACGTTCCAAGGTTGACTTTCTGGTTATCAAACGCCGTTGTATTAAGAGCAATAATACACAAATCTTTTGAGAAAGAGCAAGCATCACTTTCTTCCGAAAAATCAAGTAAAACGAACGGTGTGATCATTGAGAACGGAACGAATGAGATCATATCTCCATTCAAATGGAAGAAAGAGTCTTCTATAAAAGAGAGTAGAATTGGTTCCAATGAATGGGAGGACCCTTGTATGCTTACTTCTATCTTGGAAAAAGTAGAATCTTGGATCTTTTCGCTCATTATCGAGTCCATTTGGTGGCAGACTCTTGCTCCTTATATGCAAACCACCGCTGCAAAGGGTATCGTTAGAAGAGTTGTAGATTCAGAATCTAATAAAACGTGTGAACCATCACCTGGTTCATACGATCACGAGAAAGTGAACTCCTCCTTGGAGCTTTGGAAGACGGCTTTCATGGAAGTTTGTGAAAGAATTTGTCCTGTTCGAGGTGCAGGACATGATTGTGGTTGCTTGCGTGTGCTATCTACGTTGATAATGAAGCAGTGCATGGGTAGATTAGATGTAGCCATGTTTAACGCCATTCTTCGGGAATCAGCTGACGAGGTTCCAACAGATCCTGTGTCGGACCCTATCAGCGATCCCAGGGTTCTTCCTATTCCATCAGGGAAAGCAAGCTTTGGAGCCGGTGCACAACTGAAAAAGACGATCGGAAACTGGTCCAGATGGCTCACCGAACTATTTGGCATTGAGATCAATGACTCTTTAACAGACGAGAATGAAGCCGACTACGATGAAAACCGAGAAGTTTACGATACATCCTTCAACTCTTTTCATCTCCTCACTGCACTGAGTGAGCTCATGATGCTTCCAAAAGATATGCTCTTAAGCAACACGATCCGGAAAGAGGTGTGTCCTAGTTTTGGTGTACCGTTAATAAAGAGGATTCTTGATGGTTTCGTGCCAGATGAGTTCTGCCCAGACCCTATTCCTGATGTGGTGCTTGAAGCCCTGGATTCAGAGGATTTACTGCAGAGCTGTGGCGAAGGTTGCGTGATGGGGCTCCCATGTGCCGCACCTCCTATCGTATATCATCCACCATCTGCATCTTTAATTGGATGCGACTTAGGAGACGATGGAAACCAGGCTCGGTGTGGATCTTCGATCCTACGCAAGTCAAATACGAGCGATGATGAACTTGATGAATTGGATTCACCGTTGACTTCGATCATTGACTCTTCTCGGACTGTAACCGCTTCAACAAAGCCGATCTGGGCGTTGAAAGATTGCGGGAGTCGCAATACCGTTAGGTATCAACTCCTTAGAGAGGTGTGGATGAATAACGAGTAG 2985 42.88 MLMGSTTKNKKSPYVQLDYVINLVEIKPWPPSQSLRSLRSALIQWEYDNKISGSTKAVTPSIVSGLSVGDGKIEFNESFRLHVTLSRDMSIKAGDTETFLRNCIEFNLYEPRRDKTVKGQLLATAIVDFAEYGIVKDSLMISVPMTCKRTFGNTAQPMLFVKMQTSERNNRVRSSSGDGLIREGSLEKSYSESVSALMKEEYAEEAENASVTDDDISSQSSMAAASSTFGSTGNLSPQRENGSEAISGSSRNVNDQEVLVQDKRVAESLSSTDLYTEIINARTTLSNLRNSRFTMLPEKAESYNVKLSKLSIANDNGNSRNVAYVNLHEKVPKRAMESQMYEVDDEQSCIRLKNPNASQSGRESQIIGDLGSDVLHADRLQNTKSVSSSLDSRYSNGSDVLLDRLKNLKPVSSSLDSGFSNGSDVLLDRLKNLKPVGASLDSDFSNGSVRSGKVLDKFKKVGVSKVQDLEQRVQALEGELREAAAIEVSLYSVVAEHGSSIHKVHAPARRLSRLYLHAYKENSQSRRATSGRSIVSGLILVAKACGNDVPRLTFWLSNAVVLRAIIHKSFEKEQASLSSEKSSKTNGVIIENGTNEIISPFKWKKESSIKESRIGSNEWEDPCMLTSILEKVESWIFSLIIESIWWQTLAPYMQTTAAKGIVRRVVDSESNKTCEPSPGSYDHEKVNSSLELWKTAFMEVCERICPVRGAGHDCGCLRVLSTLIMKQCMGRLDVAMFNAILRESADEVPTDPVSDPISDPRVLPIPSGKASFGAGAQLKKTIGNWSRWLTELFGIEINDSLTDENEADYDENREVYDTSFNSFHLLTALSELMMLPKDMLLSNTIRKEVCPSFGVPLIKRILDGFVPDEFCPDPIPDVVLEALDSEDLLQSCGEGCVMGLPCAAPPIVYHPPSASLIGCDLGDDGNQARCGSSILRKSNTSDDELDELDSPLTSIIDSSRTVTASTKPIWALKDCGSRNTVRYQLLREVWMNNE 994
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain8g02064 994 Coils Coil 466 486 - -
Sain8g02064 994 ProSiteProfiles C2 NT-type domain profile. 7 167 IPR019448 -
Sain8g02064 994 MobiDBLite consensus disorder prediction 205 253 - -
Sain8g02064 994 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 3 992 IPR021827 GO:0005643(InterPro)
Sain8g02064 994 MobiDBLite consensus disorder prediction 212 253 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain8g02064 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
140600 Sain5g01902 Sain8g02064
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr8:137091991 Sain9g02169 Sain-Chr9:133280476 dispersed
Sain Sain-Chr10:157268317 Sain8g02064 Sain-Chr8:137091991 wgd
Sain Sain-Chr5:95071574 Sain8g02064 Sain-Chr8:137091991 wgd