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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso11g01329 ATGGTGATGAAGCCTGCATGGTTGGAAGGATTAATGGGAGAGAGCTTCTTTGGGATATGTAGGTTTCATGAGAATAAAAGAAAGAATGAAAAAAACATATTTTGCTTAGACTGCTGTCAAAGCTTCTGCCCTCACTGTCTTCCTGCTCATCACACTCATCCACTTCTTCAGGTGAGAAGATATGTTTACCAGGATGTTGTTAGATTAGATGACCTCGAAAAGCTCATTGACTGTTCTTTTGTACAGCCTTACACAATAAACAGTGCAAAAGTGATATTCTTGAACCAGAGGGCACAAAGTAGGTCTTGCAAGGGCCCTGCAAATTCATGCTTCACATGTGATAGAATTCTACAAGAGCCATTCCACTTCTGTTCTCTTTCTTGCAAGGTTGATCACATGGTGTATCAAGGAGAGGATCTATCTGGCATCTTGTGTAGGTTTGATGTGACCGATTTTGCCTTCTCACAATTTGAAGGACTTCGGATGGATGGTTGTGAGTTTGGAGACGATGACGGTCAGATCACCCCGAACTCCATTCTTGAAGACTTTAAAGATTCATCGGGGTCTGATAATGGCGTCAGTATTTCATACAAACCAGAAGTCGAGAGGAGGAAGAAGAAGAAAAACAATGACTTCATTCCTAAATTTTTTTCCTTTGGTAACAGAAGAAAAGGAGCTCCACAACGGTCACCACTGTCTTAA 702 41.31 MVMKPAWLEGLMGESFFGICRFHENKRKNEKNIFCLDCCQSFCPHCLPAHHTHPLLQVRRYVYQDVVRLDDLEKLIDCSFVQPYTINSAKVIFLNQRAQSRSCKGPANSCFTCDRILQEPFHFCSLSCKVDHMVYQGEDLSGILCRFDVTDFAFSQFEGLRMDGCEFGDDDGQITPNSILEDFKDSSGSDNGVSISYKPEVERRKKKKNNDFIPKFFSFGNRRKGAPQRSPLS 233
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso11g01329 233 MobiDBLite consensus disorder prediction 197 212 - -
Smso11g01329 233 MobiDBLite consensus disorder prediction 184 233 - -
Smso11g01329 233 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 232 - -
Smso11g01329 233 Pfam PLATZ transcription factor 59 130 IPR006734 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso11g01329 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr11:72390775 Smso12g03725 Smso-Chr12:90580378 dispersed
Smso Smso-Chr11:72390775 Smso12g01732 Smso-Chr12:21084821 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Smso PLATZ 1.5e-26 No_clan TF PLATZ