Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Smso13g00180	ATGGCTTCTTCCACTTCTACCTCCACTCCCACTTGGAATAATCCCAGAACCCAATTCTCATCTTCCTCTAAACATCCGTTTCCTTCAAACCCATCATCGATTTCTTTCAGTAAAAAATCCAATTCGATTGTCTCTGCACTTCAAACGCCTTCAATTCTTCAAATTCCCAAACAGGCGCCGATGAAAAGTTCCCCCGGCGCGATCGAATTACCCTCTAATTCTCCTTCGTCTTCGTCTTCTCCGGTGGTCCATCAAAACTGGAACTTGTTACAAAAAGTTGCAGCAATGGCATTGGACGCTATCGAAGACGGATTAAAAGAGAGAGAAAAACTACACCCTTTACCCAAAACAGCAGACCCAAATGTCCAAATCGCCGGAAACTTCTCACCGGTACCGGAACAACCTGTACGACAACATTTACCGGTGGTCGGAAAAATTCCCGATTACATTCAAGGAGTTTATTTAAGAAACGGAGCTAACCCGTTATTCGAACCCACCTCCGGCCACCACTTGTTCGACGGAGACGGTATGATTTACGCGGTTAAATTCGATAACGGGTCAGCAAGCTACGCTTGCAGATTCACCGAAACCCAAAGGCTTGTACAAGAGCGAGCAATCGGGAAGCCGGTTTTCCCAAAGGCGATTGGAGAACTCCACGGCCATTCGGGGATCGCGAAGCTTCTATTATTTTACGCACGTGGTTTATGTGGTTTAGTTGATCATACTCAGGGAATTGGAGTAGCGAACGCGGGATTGGTTTATTTCAACAACCGGCTTTTAGCTATGTCAGAAGATGACTTGCCGTATCACGTGCGAGTCACGCCCTCTGGTGACTTGAAAACCGCTGGCCGGTATAATTTTGATGGTCAATTAGAGTCAACGATGATCGCTCACCCAAAACTTGACCCGGTTTCGGGTGAGCTTTTCGCGTTGAGCTATGATGTGATTCAAAAGCCGTATTTGAAATACTTCCGGTTTTCACCCGATGGGACGAAATCGAAAGATGTCGCCATTGATCTCGAGAAGCCTACTATGGTTCATGATTTCGCGATCACGGAGAATTTCGTGGTTGTCCCGGACCATCAGGTGGTGTTCAAGATGTCGGAAATGGTAAAAGGTGGGTCTCCAGTGGTGTATGACAAAGAGAAGGTGTCACGGTTTGGAATACTCGATAAATACGCGGAAAACGGATCGGGTATTAAATGGGTCGAAGTTCCTGATTGTTTTTGTTTTCATCTCTGGAACGCCTGGGAAGAACCCGAACACGACGAGGTCGTAGTGATCGGGTCCTGCATGACTCCAGCGGACTCAATATTTAACGAATGTAACGAAGAATTAAAAAGCGTTCTCTCGGAAATCCGGCTTAATCTAAAAACCGGAAAATCCAGTCGCCGGGCGATAATTTCACCGTCAAATGACGTAAATTTGGAAGCGGGGATGGTGAATAAGAACCTCCTCGGCCGGAAATCGAAGTTCGCTTACCTCGCGATCGCGGAGCCCTGGCCGAAGGTCTCCGGTTTCGCTAAAGTAGATCTTTCCACCGGCGAAATAAAGAAATTCTTCTACGCTGACGAAAAGTACGGCGGCGAGCCTCTGTTTCTTCCCAGAAACTGCGATTCCGCGGTGGAAGATGACGGTCACATCTTGGCATTCGTTCACGACGAAAAGACATGGAAATCGGAACTGCAAATCGTTAATGCAATGACGATGAAATTAGAGGCGACGGTGAAGCTGCCTTCTAGGGTTCCGTATGGGTTTCATGGAACGTTTATTACCGCCAAAGATTTGGCAACGCAGGCTTGA	1803	47.2	MASSTSTSTPTWNNPRTQFSSSSKHPFPSNPSSISFSKKSNSIVSALQTPSILQIPKQAPMKSSPGAIELPSNSPSSSSSPVVHQNWNLLQKVAAMALDAIEDGLKEREKLHPLPKTADPNVQIAGNFSPVPEQPVRQHLPVVGKIPDYIQGVYLRNGANPLFEPTSGHHLFDGDGMIYAVKFDNGSASYACRFTETQRLVQERAIGKPVFPKAIGELHGHSGIAKLLLFYARGLCGLVDHTQGIGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTAGRYNFDGQLESTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSPDGTKSKDVAIDLEKPTMVHDFAITENFVVVPDHQVVFKMSEMVKGGSPVVYDKEKVSRFGILDKYAENGSGIKWVEVPDCFCFHLWNAWEEPEHDEVVVIGSCMTPADSIFNECNEELKSVLSEIRLNLKTGKSSRRAIISPSNDVNLEAGMVNKNLLGRKSKFAYLAIAEPWPKVSGFAKVDLSTGEIKKFFYADEKYGGEPLFLPRNCDSAVEDDGHILAFVHDEKTWKSELQIVNAMTMKLEATVKLPSRVPYGFHGTFITAKDLATQA	600

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Smso13g00180	600	MobiDBLite	consensus disorder prediction	67	83	-	-
	Smso13g00180	600	MobiDBLite	consensus disorder prediction	54	83	-	-
	Smso13g00180	600	Pfam	Retinal pigment epithelial membrane protein	131	591	IPR004294	GO:0016702(InterPro)
	Smso13g00180	600	PANTHER	BETA-CAROTENE DIOXYGENASE	112	591	IPR004294	GO:0009570(PANTHER)\|GO:0010436(PANTHER)\|GO:0016121(PANTHER)\|GO:0016702(InterPro)
	Smso13g00180	600	MobiDBLite	consensus disorder prediction	1	40	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Smso13g00180	K09840	9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	143016	Smso10g03382	Smso13g00180
	144815	Smso13g00180	Smso9g00683
	424933	Smso13g00180	Smso29g00080
	424934	Smso13g00180	Smso7g00075

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Smso	Smso-Chr13:12138897	Smso20g00575	Smso-Chr20:9273964	dispersed
	Smso	Smso-Chr10:89039685	Smso13g00180	Smso-Chr13:12138897	wgd
	Smso	Smso-Chr13:12138897	Smso16g01589	Smso-Chr16:77283063	wgd
	Smso	Smso-Chr13:12138897	Smso26g01838	Smso-Chr26:34787698	wgd
	Smso	Smso-Chr13:12138897	Smso29g00080	Smso-Chr29:1669178	wgd
	Smso	Smso-Chr13:12138897	Smso7g00075	Smso-Chr7:1565344	wgd
	Smso	Smso-Chr13:12138897	Smso9g00683	Smso-Chr9:15882559	wgd