AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso13g00300 ATGTTCTACTACATGAAAGCCGGATGGGTCGGGGACGATGCTATCTCACCCATCATTGGTGAACATGATCCATACTATCATGTTTCTGCTAGGGAGCAACATCATATCCGTGCAGCTGCTTTTCTCATGACATGTGTTATGATTGTTGCTGTTCTATCATCAATAGCTATTGTTAGACGGATTCTTAAGGCAACATCAGTACTCAAGGTTGCTGCAAAGGTTATTGGAGAAGTTCATGCTCTAATAATCTTCCCGGTTATACCGGACACAGTCCTTGCAGTTTTTTATATGTTTTGGTTATCGGCTGCTCTTAATCTTTTTAGTTCGGGTCAAATAGTCCACAATGATTGCAACACAAATTGTTGTGCTTGTGATCTTAAAGCCAAACGGGTCAGTTGTGATGATTGTTGTGGCTATAGTATCCATTACACACCACATATTGCCGCCTCAATTCTATTCCACTTGTTTGGGTGCTATTGGGCTACTCAGTTTATCATAGCGTGTTCTTCAACTGTGATTGCTGGTTCTGTAGCTTCATACTATTGGGCTCGTGGGGAATCTTTGACAACAATTCCGTTTCTTCCCGTTTTTTCATCAATGAAGCTACTCATGCGATATAGCCTTGGGTCGGTGGCGATCGGCTCCTTGATCGTATCTTTTGTTGAGTCAACTAGGTTCATACTTGAGGCCATACGCCGGAGACTAAAAGTTGCTGACATCATGCCCGGAAGCTGGATTAAACGGATGATGTTTTATACTTCTCGGTTTTGCTTAAAATGCATTGAATTGACCATAAAGTCTGTAAACCGCAATGCTTACATCATGATTGCTATAACAGGAAAAGGGTTTTTTAGAGCTTCTGAAATGGCAACCGATTTGATAATTAGCAACATTCTCCGTATAGGCCGAGTAAATGTAATCGGGGACGTTATTCTCTTTCTTGGAAAGCTGTGTGTGAGTCTTGCAAGTGCACTTTTTGCATTTCTTATGTTGGATTCTCATAAATACAAATCATCCCACAACAAGATAACGTCCCCACTATTCCCCGTGCTGGCGTGTTGGGTCCTCGGGTATGTGGTGGCTACCCTTTTCTTTGGGGTGGTGGAAATGTCGATCGATACAATTATACTTTCATATTGCCAGGATGCAGAGGAACATCAGGGGACTGCACATTATGCACCTCCACTTTTGATTGAAACATTTGATGAACAAAATGAGGTGCAAAGAATTGCACAGTGA 1239 41.97 MFYYMKAGWVGDDAISPIIGEHDPYYHVSAREQHHIRAAAFLMTCVMIVAVLSSIAIVRRILKATSVLKVAAKVIGEVHALIIFPVIPDTVLAVFYMFWLSAALNLFSSGQIVHNDCNTNCCACDLKAKRVSCDDCCGYSIHYTPHIAASILFHLFGCYWATQFIIACSSTVIAGSVASYYWARGESLTTIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADIMPGSWIKRMMFYTSRFCLKCIELTIKSVNRNAYIMIAITGKGFFRASEMATDLIISNILRIGRVNVIGDVILFLGKLCVSLASALFAFLMLDSHKYKSSHNKITSPLFPVLACWVLGYVVATLFFGVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDEQNEVQRIAQ 412
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso13g00300 412 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 29 405 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Smso13g00300 412 Pfam Plasma-membrane choline transporter 42 384 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso13g00300 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr13:30522177 Smso7g00353 Smso-Chr7:5852535 dispersed
Smso Smso-Chr13:30522177 Smso29g00399 Smso-Chr29:5983556 transposed