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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g01141 ATGGCTCAGTCGCTAGCAACACCCGTGGCACCTTCTGTGTCTCTTATCTGCAACAGCTTCTCTTCGTTCAAATCCAAATCTGCTTCAAATTCTTTGTCATTCTCGACTTTCAATCCTCCCAAGGTTGGTGGATTGAGCATTAGATGCGCTCGTGTGGGAGGAGTGGAGATACCTAACAACAAGAGGGTTCAGTATTCGCTACAGTACATACATGGAATAGGGCGTACCAGAGCACTTGAAATCCTGAATGATCTCAAAATGGAGAACAAAATCACCAAAGATTTGTCCGAAGATGAACTTATTGCTCTTCGTGATGAAGTCTCCAAGTACATGATTGAAGGAGACCTTAGACGATTCAACGCACTTGCAATCAGGAGATTGAAAGAAATCCAGTGCTACCGAGGCATACGCCACATCCAGGGACTGCCTTGCAGAGGGCAGCGCACGAAGAACAATTGCAGGACTTTGAAGGGCAAGAAGGTTGCGATTGCTGGCAAAAAGAAGGCCCCTCGTTAG 516 46.51 MAQSLATPVAPSVSLICNSFSSFKSKSASNSLSFSTFNPPKVGGLSIRCARVGGVEIPNNKRVQYSLQYIHGIGRTRALEILNDLKMENKITKDLSEDELIALRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 171
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g01141 171 SUPERFAMILY S13-like H2TH domain 50 161 IPR010979 GO:0003676(InterPro)
Smso1g01141 171 PANTHER 30S RIBOSOMAL PROTEIN S13-40S RIBOSOMAL PROTEIN S18 29 168 - GO:0005739(PANTHER)|GO:0015935(PANTHER)
Smso1g01141 171 Pfam Ribosomal protein S13-S18 51 155 IPR001892 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Smso1g01141 171 ProSiteProfiles Ribosomal protein S13 family profile. 52 158 - -
Smso1g01141 171 Gene3D - 50 118 - -
Smso1g01141 171 Hamap Small ribosomal subunit protein uS13 [rpsM]. 49 165 IPR001892 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Smso1g01141 171 Gene3D 30s ribosomal protein s13, domain 2 119 171 IPR027437 -
Smso1g01141 171 NCBIfam 30S ribosomal protein S13 51 160 IPR019980 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Smso1g01141 171 FunFam 30S ribosomal protein S13 47 118 - -
Smso1g01141 171 ProSitePatterns Ribosomal protein S13 signature. 134 147 IPR018269 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g01141 K02952 small subunit ribosomal protein S13
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Event-related genes

Select Gene_1 Gene_2 Event_name
337907 Smso28g00676 Smso1g01141
356791 Smso1g01141 Smso28g00676
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:23391249 Smso21g02655 Smso-Chr21:57008248 dispersed
Smso Smso-Chr1:23391249 Smso28g00676 Smso-Chr28:33400589 wgd