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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03316 ATGCATTCATTCGGATACAGAGCCAACGCTTTGCTGACTTTTGGCATTACAATACTTGCGGTGATGTGCGCCATCGCATCGGTCTCCGACAATTTCAGTTCTCCTTCTCCCACCTCTCAAGTTCAGGTTTTGAACATCAATTGGTTCCGGAATAAGCCGGATGGCGATGATGAGGTCAGCATGACAATGAATATATCAGCAGATTTGCAGTCATTGTTTACATGGAACACAAAACAGGTTTTTGTATTTCTTGCAGCTGAGTATGAAACCCCACAAAATTCTCTAAATCAGGTTTCGTTGTGGGACGGAATCATTCCTGCGAAAGAGCATGCAAAATTCTACATCCATACGACTAACAAGTACCGTTTTGTAGATCAGGGAAGTAATCTCCGGGGAAGAGATTTCAACTTGACATTGCATTGGCATGTCATGCCCAAGACCGGGAATATGTTTGCTCACAAAATAGTCATCACCGGATTCCGCTTGCCCCAATCTTATAAATAG 504 43.25 MHSFGYRANALLTFGITILAVMCAIASVSDNFSSPSPTSQVQVLNINWFRNKPDGDDEVSMTMNISADLQSLFTWNTKQVFVFLAAEYETPQNSLNQVSLWDGIIPAKEHAKFYIHTTNKYRFVDQGSNLRGRDFNLTLHWHVMPKTGNMFAHKIVITGFRLPQSYK 167
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03316 167 PIRSF SPC3 1 167 IPR007653 GO:0005787(InterPro)|GO:0006465(InterPro)|GO:0016020(InterPro)
Smso1g03316 167 PANTHER MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22-23 1 167 IPR007653 GO:0005787(PANTHER)|GO:0005787(InterPro)|GO:0006465(PANTHER)|GO:0006465(InterPro)|GO:0016020(InterPro)|GO:0045047(PANTHER)
Smso1g03316 167 Pfam Signal peptidase subunit 1 164 IPR007653 GO:0005787(InterPro)|GO:0006465(InterPro)|GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03316 K12948 signal peptidase complex subunit 3 [EC:3.4.-.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr11:74309500 Smso1g03316 Smso-Chr1:114462430 dispersed
Smso Smso-Chr15:9651457 Smso1g03316 Smso-Chr1:114462430 dispersed
Smso Smso-Chr1:114462430 Smso25g01121 Smso-Chr25:40894384 dispersed
Smso Smso-Chr1:114462430 Smso12g01647 Smso-Chr12:19058592 transposed