AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03338 ATGCCTCATTTGTTATCATCAAATGGTATACGGATTCTTACTCAAAAAGTTCTGTTCTTCACCGTCGGCGTCGCATCGGTGGTTATCGCGGTGGAATTCGTCGTTCCGTTGCTGTTAGACGTCCAGTCCTGTCTCAAACCACCGTATCTCTACCTCCTCATCAACATTATCATTCTCACAATCACTGCCACCTCACATTTCCACCAACACGATGATCAATCTCATCAGAGTTTTGGTATTTTGGACGGTGTACCTTGGTCTTTTGAGCAGCCTCAACCACCGATTGAAGGGGTGGAGGATTTTGATGTACGGAGGTCTGCCACTATCTGGAATCCGCCGGTTCCTCCGCCGCTAGTTACTTCCCCATTCGCTCAACAGAAACCGACAGAAAACATTCCTGATGGTGGGGAGGAAAATAATTTTATCGACGGCCATGACATGCCGGTCACGAAACACCTCCAGAAATCGGTGACCTTCGATAACCATCGTTACTCGTACGGCCGTCTTCAGGCAGCGGAAACGGCGGTGGTGAGTAAGAAAAAGAACGCGGTGAAGAAATCCGCGACGCTCAAAGACCGTACGAACTACGACAACAAAAACCACCGTCTTCCGTCTTCACCGGCGTCGGGTGGAAAACTGAGGACGGTCGGGTCACCGAGTCACGACGAGTTGAACCGGCGAATCGAAGAGTTTATAAAAAAGTTTAATGATGAGATGAGGTTGCAGAGACGAGAGTCAGTGAAGAAGCAGTACAGGGTCGGGAGAAAAAATAATTAA 777 48.65 MPHLLSSNGIRILTQKVLFFTVGVASVVIAVEFVVPLLLDVQSCLKPPYLYLLINIIILTITATSHFHQHDDQSHQSFGILDGVPWSFEQPQPPIEGVEDFDVRRSATIWNPPVPPPLVTSPFAQQKPTENIPDGGEENNFIDGHDMPVTKHLQKSVTFDNHRYSYGRLQAAETAVVSKKKNAVKKSATLKDRTNYDNKNHRLPSSPASGGKLRTVGSPSHDELNRRIEEFIKKFNDEMRLQRRESVKKQYRVGRKNN 258
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03338 258 MobiDBLite consensus disorder prediction 184 220 - -
Smso1g03338 258 MobiDBLite consensus disorder prediction 185 199 - -
Smso1g03338 258 Pfam Cotton fibre expressed protein 221 249 IPR008480 -
Smso1g03338 258 Pfam Domain of unknown function (DUF4408) 42 67 IPR025520 -
Smso1g03338 258 PANTHER COTTON FIBER (DUF761) 34 250 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03338 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:115125137 Smso21g01875 Smso-Chr21:23418570 dispersed
Smso Smso-Chr1:115125137 Smso4g01916 Smso-Chr4:29152994 transposed