AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03339 ATGCTTGCTCTGCACTTTTCATCTCAGCTTGCTTCACAGCATCTTTATTACTGGAAAAACCCAAAGGAACAAAGAGCCATTATGATAATTATTCTTATGGCCCCTATTTATGCTGTTAGTTCTTTTGTGGGTGTGCTGGATCTCGAGGGAGGCAAACTGTTTCTCATGCTGATCGGTTTGATTAAGGAATGTTACGAGGCTTTGGTTGTTGCTAAGTTTCTTGCTTTACTGTATGGGTATGCGAATATGGATGTTAGCAATAATATAATTCCTGATGAAGTCAAGGGAAGAGAAATCCGTCATGCGTTCCCAGTGACTCTTTTCCAACCTCGTTCCGATAAACTGAATCACCAAACGTTGAAGCTTCTGAAATACTGGACTTGGCAGTTTGTTGTTACACGACCCGCATGTTCATTTCTAACGTTCGGTTTACGGTTGCTTGGATTGTATCCTGATTGGGTCAGCTGGACATTCACCGTTATTCTTAACATTTCCTTTTACATGGCTATGTATTCTTTACTAGTCTTTTACCATGTTTTTGCAAAGGAATTGAAGCCTCACAAGCCACTAGCCAAGTTCTCATGCATAATTGGGATAATCTTCTTCTGCTTTTGGCAGGGAGTATTTATCGACGTCCTAGAGAAATCAGGTGTCATAAAATCACATCATTTCTGGATGGATGTTGAGCATGTTGGGGACGCGATTAAAAACTTCCTGATATGTGTTGAGATGATTGGATTTTCGGTTTTCCAACAATACGCGTTTCACTTTGAACGGTATAGTGGAGATGTCCAAACGATGCTGCAAAAGGGGAAAAGGAACGAGTGA 828 40.82 MLALHFSSQLASQHLYYWKNPKEQRAIMIIILMAPIYAVSSFVGVLDLEGGKLFLMLIGLIKECYEALVVAKFLALLYGYANMDVSNNIIPDEVKGREIRHAFPVTLFQPRSDKLNHQTLKLLKYWTWQFVVTRPACSFLTFGLRLLGLYPDWVSWTFTVILNISFYMAMYSLLVFYHVFAKELKPHKPLAKFSCIIGIIFFCFWQGVFIDVLEKSGVIKSHHFWMDVEHVGDAIKNFLICVEMIGFSVFQQYAFHFERYSGDVQTMLQKGKRNE 275
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03339 275 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 1 265 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
Smso1g03339 275 SMART Solute-trans-a-2 1 260 IPR005178 -
Smso1g03339 275 Pfam Organic solute transporter Ostalpha 2 260 IPR005178 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03339 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:115157086 Smso7g00375 Smso-Chr7:6198477 dispersed
Smso Smso-Chr1:115157086 Smso29g00423 Smso-Chr29:6310780 transposed