AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03343 ATGGAGCTGAATTCAAACTACTATTCGATCATCGATTTCCTGGAATCCAAGTCCTTGTCATGGATTTTCATTGCAGATCACCGTTATCCATGGCGAGCAACACTCTCATGGACCACCTTTTTTCTCTTAACTTTTGCAGTCCCGGTTTTGTGTCACTTTGCTTATCACCTCCGACCTTTCGATTGGATCGTGCAAGTGTCCCTCTCTCTGATCTCTACGCTATCGTTCGTTAGTCTGTTGCGGTTTACTCGGAAGTACGGCCTCCGGCGGTTTCTGTTTCTGGATAAGATGGACGGCGTTGGCAATAAAGTTAGACGAAGGTATTCAGAGGAGGTTCATAGATCCACAATGCTCCTATGTGCTTTCATCCTCCCATGTTTTGTTTGTGACATGATTTACAACATATGGTGGTTTACCTCCGGAGGGACCCACATACCCTACATCTACAACCTTTACTTTAGTCATGCCATGGCATGCTTGATGCACATGACTTCTTGGTTATACAGGACTTCACTATTCTTGCTTGTTTGTGTTCTTTTCAAACTCACATGTTCTCTACAAATACTTAGGCTGGAAGATTTTGCTCAAGTGTTTGAAAAACTATCTAATGTGGGCCCGATATTGGTCCAACACCTCACTATCAAAAGAAACCTTCGTGTTATAAGCCATAGGTTTCGTGCGTTTATTTTATTAACATTAATATTGGTGACAGCGAGCCAGTTCGCTTCTCTGCTTGTTACAACTGTGGATGGCTCAGTTGTAAATATATCTAGCACCGGAGAACTTGCGTTATGCTCTATTACACTTGTGTTTGGTCTGTATATATGCCAACGCAGTGCAGCAAAGATCACACACAAGGCTCAATCATTAACAAGCTTGGTCACCAAATGGCATATGTGTGCGACCATCGACTCTTTTGGTGATATGGGCGCTGTTGATGAAAATCCAAGGGCTAATATTACTCCACAAATGGTTGATTTGGATTCAGAAAATGAGGTTGGAGATGGTGATGATGAACTAGACAATACAAACTTCATTCCAGTTTATAAGCATACAATTTCATACCAGCAAAGACAAGCTTTAGTGACATATTTTGAGAACAATGAAACTGGGATCACGGTGTATGGGTTCATGTTAGACAGGACATCTATAAACACAGTCTTTGCAATTCAGTTGTCTCTTGCGCTTTGGTTGTTCGATAAGACAATTGGCTTCGGGTGA 1221 41.85 MELNSNYYSIIDFLESKSLSWIFIADHRYPWRATLSWTTFFLLTFAVPVLCHFAYHLRPFDWIVQVSLSLISTLSFVSLLRFTRKYGLRRFLFLDKMDGVGNKVRRRYSEEVHRSTMLLCAFILPCFVCDMIYNIWWFTSGGTHIPYIYNLYFSHAMACLMHMTSWLYRTSLFLLVCVLFKLTCSLQILRLEDFAQVFEKLSNVGPILVQHLTIKRNLRVISHRFRAFILLTLILVTASQFASLLVTTVDGSVVNISSTGELALCSITLVFGLYICQRSAAKITHKAQSLTSLVTKWHMCATIDSFGDMGAVDENPRANITPQMVDLDSENEVGDGDDELDNTNFIPVYKHTISYQQRQALVTYFENNETGITVYGFMLDRTSINTVFAIQLSLALWLFDKTIGFG 406
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03343 406 Pfam Protein of unknown function (DUF3537) 18 390 IPR021924 -
Smso1g03343 406 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 17 404 IPR021924 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03343 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337921 Smso28g00636 Smso1g03343
357566 Smso1g03343 Smso28g00636
428947 Smso1g03343 Smso28g00636
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:115212555 Smso1g03437 Smso-Chr1:117562690 dispersed
Smso Smso-Chr1:115212555 Smso28g00636 Smso-Chr28:24824998 wgd