AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03532 ATGGGCAGTTACAGGTTCAGATTCTCAACCATCATCCCAAATTCATGGTTTCACAGCTCCACCAAAGTCAAGAACAAAATAACCAAAACCCAACCAATCACAACTTCATCACCGTCGTCATCGTCGTCGTCGTTTCCATCTACGCAACCGGCAGATTACAACAGAAAATCCTACTACTTCACTAGAGATTTAACCCTACCCGACCTGACGACCCGTATTCAAGATCCATCACCACCGGAGACCCGCCAGCCCGACCCGCCAAGAAAGTCAACCAAGAAAAAAAGACCCTATTCCCCAAAGAAACCGATTAGCCAGAAATCGGTCTCCCCGGAACACAATCCCGCAGCACGGTGTAGCTGCGGGATTACTACGAAATCCGTATCGGAGGAGTCAAACCCCTCCGATACGGAAGTCAAACAATCTATTAATTGTTCGTGCAAAACGAACAATTCATACGATGTTTTTGGGAAAGTTGACCTCCCGCCGATTATAACGAAACCCGTCAAACAAGACGAATTCGGGTCGGGTAAATGGGTGATTGACGGCGAAAGCCGGGGATTATCGGTGCGGGTTGTGAAGCAGGGTATTAGCGGGAGTCCCAGTAGAAAAGTGAAAGGGAACGGGTACTCGCCGCGGTTGGGGAACCGGGTACGAGTGAACGGGATAAACGGCCGGAGGAGAAACGGGAGCCGGCGAAGCTTATCGGAGAGTTTGGCAGTTGTGAAAACATCGGTGGATCCTGGAAGGGATTTTAAGGAATCAATGGTTGAGATGATAATGGAGAATAATATTAAGAGTTCAAAAGATTTGGAAGATCTTCTTGCATGTTATTTGTCATTAAATTGTGATGAATATCATGACTTGATCATCAAGGTATTCAAGCAAATTTGGTTTGAGAGTACTGATATTAGACTGTAG 918 46.41 MGSYRFRFSTIIPNSWFHSSTKVKNKITKTQPITTSSPSSSSSSFPSTQPADYNRKSYYFTRDLTLPDLTTRIQDPSPPETRQPDPPRKSTKKKRPYSPKKPISQKSVSPEHNPAARCSCGITTKSVSEESNPSDTEVKQSINCSCKTNNSYDVFGKVDLPPIITKPVKQDEFGSGKWVIDGESRGLSVRVVKQGISGSPSRKVKGNGYSPRLGNRVRVNGINGRRRNGSRRSLSESLAVVKTSVDPGRDFKESMVEMIMENNIKSSKDLEDLLACYLSLNCDEYHDLIIKVFKQIWFESTDIRL 305
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03532 305 Pfam Transcriptional repressor, ovate 244 299 IPR006458 -
Smso1g03532 305 MobiDBLite consensus disorder prediction 28 116 - -
Smso1g03532 305 MobiDBLite consensus disorder prediction 28 55 - -
Smso1g03532 305 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 36 299 IPR038933 GO:0045892(InterPro)
Smso1g03532 305 Pfam DNA-binding domain 1 40 IPR025830 GO:0003677(InterPro)
Smso1g03532 305 ProSiteProfiles OVATE domain profile. 240 299 IPR006458 -
Smso1g03532 305 NCBIfam uncharacterized plant-specific domain TIGR01568 239 298 IPR006458 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03532 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337961 Smso28g00529 Smso1g03532
357526 Smso1g03532 Smso28g00529
429008 Smso1g03532 Smso28g00529
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4942615 Smso Smso10g00553 Smso-Chr10:5681766 Smso1g03532 Smso-Chr1:119868693
4958821 Smso Smso17g00513 Smso-Chr17:5490633 Smso1g03532 Smso-Chr1:119868693
4967689 Smso Smso1g03532 Smso-Chr1:119868693 Smso8g00541 Smso-Chr8:8097577
5027932 Smso Smso1g03532 Smso-Chr1:119868693 Smso28g00529 Smso-Chr28:15750760
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Smso Ovate 4e-23 No_clan TF OFP