Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso1g03532 | ATGGGCAGTTACAGGTTCAGATTCTCAACCATCATCCCAAATTCATGGTTTCACAGCTCCACCAAAGTCAAGAACAAAATAACCAAAACCCAACCAATCACAACTTCATCACCGTCGTCATCGTCGTCGTCGTTTCCATCTACGCAACCGGCAGATTACAACAGAAAATCCTACTACTTCACTAGAGATTTAACCCTACCCGACCTGACGACCCGTATTCAAGATCCATCACCACCGGAGACCCGCCAGCCCGACCCGCCAAGAAAGTCAACCAAGAAAAAAAGACCCTATTCCCCAAAGAAACCGATTAGCCAGAAATCGGTCTCCCCGGAACACAATCCCGCAGCACGGTGTAGCTGCGGGATTACTACGAAATCCGTATCGGAGGAGTCAAACCCCTCCGATACGGAAGTCAAACAATCTATTAATTGTTCGTGCAAAACGAACAATTCATACGATGTTTTTGGGAAAGTTGACCTCCCGCCGATTATAACGAAACCCGTCAAACAAGACGAATTCGGGTCGGGTAAATGGGTGATTGACGGCGAAAGCCGGGGATTATCGGTGCGGGTTGTGAAGCAGGGTATTAGCGGGAGTCCCAGTAGAAAAGTGAAAGGGAACGGGTACTCGCCGCGGTTGGGGAACCGGGTACGAGTGAACGGGATAAACGGCCGGAGGAGAAACGGGAGCCGGCGAAGCTTATCGGAGAGTTTGGCAGTTGTGAAAACATCGGTGGATCCTGGAAGGGATTTTAAGGAATCAATGGTTGAGATGATAATGGAGAATAATATTAAGAGTTCAAAAGATTTGGAAGATCTTCTTGCATGTTATTTGTCATTAAATTGTGATGAATATCATGACTTGATCATCAAGGTATTCAAGCAAATTTGGTTTGAGAGTACTGATATTAGACTGTAG | 918 | 46.41 | MGSYRFRFSTIIPNSWFHSSTKVKNKITKTQPITTSSPSSSSSSFPSTQPADYNRKSYYFTRDLTLPDLTTRIQDPSPPETRQPDPPRKSTKKKRPYSPKKPISQKSVSPEHNPAARCSCGITTKSVSEESNPSDTEVKQSINCSCKTNNSYDVFGKVDLPPIITKPVKQDEFGSGKWVIDGESRGLSVRVVKQGISGSPSRKVKGNGYSPRLGNRVRVNGINGRRRNGSRRSLSESLAVVKTSVDPGRDFKESMVEMIMENNIKSSKDLEDLLACYLSLNCDEYHDLIIKVFKQIWFESTDIRL | 305 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso1g03532 | 305 | Pfam | Transcriptional repressor, ovate | 244 | 299 | IPR006458 | - | |
| Smso1g03532 | 305 | MobiDBLite | consensus disorder prediction | 28 | 116 | - | - | |
| Smso1g03532 | 305 | MobiDBLite | consensus disorder prediction | 28 | 55 | - | - | |
| Smso1g03532 | 305 | PANTHER | TRANSCRIPTION REPRESSOR OFP7-RELATED | 36 | 299 | IPR038933 | GO:0045892(InterPro) | |
| Smso1g03532 | 305 | Pfam | DNA-binding domain | 1 | 40 | IPR025830 | GO:0003677(InterPro) | |
| Smso1g03532 | 305 | ProSiteProfiles | OVATE domain profile. | 240 | 299 | IPR006458 | - | |
| Smso1g03532 | 305 | NCBIfam | uncharacterized plant-specific domain TIGR01568 | 239 | 298 | IPR006458 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso1g03532 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 337961 | Smso28g00529 | Smso1g03532 | |
| 357526 | Smso1g03532 | Smso28g00529 | |
| 429008 | Smso1g03532 | Smso28g00529 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 4942615 | Smso | Smso10g00553 | Smso-Chr10:5681766 | Smso1g03532 | Smso-Chr1:119868693 | |
| 4958821 | Smso | Smso17g00513 | Smso-Chr17:5490633 | Smso1g03532 | Smso-Chr1:119868693 | |
| 4967689 | Smso | Smso1g03532 | Smso-Chr1:119868693 | Smso8g00541 | Smso-Chr8:8097577 | |
| 5027932 | Smso | Smso1g03532 | Smso-Chr1:119868693 | Smso28g00529 | Smso-Chr28:15750760 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Smso | Ovate | 4e-23 | No_clan | TF | OFP |