AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03605 ATGGAATCGAATAACACGAGATTTGCTTTGACTGTTCTTTTATTGTCGGCTGTCGTGATGGTTGCATCTGCTTCGGCTGACAGTGGTTATGGAAAGTCGCAACTCGAGGGGTACATGAAACCAAAACCTGCTACCCCAAAAGAGCACACGGGTTATGAAAAACCTGATCCTAAGGTACCAACAAAGTCTGTGTTACCAAAAGAGGAGCATGGAGCGTATGAGAAGACTATTCCTAAGATACCAACAAAGCCCGTGATACCAAAAGAGGAGCATGGAGCATATGAGAAGCCCAAGTCGAAGTTGCCAACAAAGCCCGTGATACCAAAAGTGGAACACGGTGCCTATGAAAAAGGTTATCCTAAGTTACCAACAAAACCCGTGATACCAAAAGAGGAACATGAAGCCTATGAGAAGACTGGTCCTAAGTTGCCAACAAAACCCGTGATACCAAAACAGGACCCTAAAAGTTATGAAAAAAGTTATCCTAAGATGCCAACGACCCAAAAGCCGTTGGTACCCAAGGTGCCAGAACACCGAAAGAACATAGCCGTTCAAGGTCTTATTTATTGTAAATACGGTTCCAAACTCCTCCCACTTCAAGGAGCGACCGCGAGAGTGACTTGTTTGGCAGTACACAAGAACGGATATGAATCCGCACCATTCTCATTCTCGAGTTGTCCAGCAAACGAGAAGGGTTACTTCTTGGCCAAGATACCATCATCGACGCTCGTAAAAGACGATCTATGGGAGATCACAGAGTGCAAGGCTTTCCTTGAAAACTCGCCATGGACGAGCTGCAAGGTTCCAGAAGATACCAACGGAGGAATTAAGGGTGCTCGTCTTACATTTTCTCGTCATCTCAATAGCAACGGATATTGTTTGTCATCGGTTGGTTGCTACTGCGTAACAGTTACGACTTCTCCCTATTGCCACCAATGGCACGGTTCAGGTTGCCACGTCTCAGTTGTGATTGAGCTGGTGGTTGGATTGCGACTAATGGCGCTCAGCAGGAAGTTTCTACTGAGCATAGTCCCCACTGCTGGTATCATGAACCTGAATGACAGACTCAAGGTGTATGTTGATGATCAGACGGCTGTAAAAGAAGACAACCCACCAACCCAGTTGATGAAGAAAGAAGGAAAACACACAGAAGATGAATTGGTCAAGAAACATGAAATCCCACTTGTTCAATCAATTGAAGACAGTGAGAAAGATGTTACATTGACGAATGAGGTAATTGAGTGTATGCAGGAGGAACCGACACCAGAAGCTAAAAGATCAGTAACCAGAAGATTGAAGAAAATATGGAGGAAAATCACACGATTTTACGCAAAAATCGGATGA 1344 44.64 MESNNTRFALTVLLLSAVVMVASASADSGYGKSQLEGYMKPKPATPKEHTGYEKPDPKVPTKSVLPKEEHGAYEKTIPKIPTKPVIPKEEHGAYEKPKSKLPTKPVIPKVEHGAYEKGYPKLPTKPVIPKEEHEAYEKTGPKLPTKPVIPKQDPKSYEKSYPKMPTTQKPLVPKVPEHRKNIAVQGLIYCKYGSKLLPLQGATARVTCLAVHKNGYESAPFSFSSCPANEKGYFLAKIPSSTLVKDDLWEITECKAFLENSPWTSCKVPEDTNGGIKGARLTFSRHLNSNGYCLSSVGCYCVTVTTSPYCHQWHGSGCHVSVVIELVVGLRLMALSRKFLLSIVPTAGIMNLNDRLKVYVDDQTAVKEDNPPTQLMKKEGKHTEDELVKKHEIPLVQSIEDSEKDVTLTNEVIECMQEEPTPEAKRSVTRRLKKIWRKITRFYAKIG 447
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03605 447 Pfam Pollen protein Ole e 1 like 184 278 - -
Smso1g03605 447 MobiDBLite consensus disorder prediction 42 70 - -
Smso1g03605 447 MobiDBLite consensus disorder prediction 29 70 - -
Smso1g03605 447 PANTHER OS01G0164075 PROTEIN 10 301 - GO:0071944(PANTHER)
Smso1g03605 447 MobiDBLite consensus disorder prediction 135 172 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03605 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
346431 Smso20g01822 Smso1g03605
429041 Smso1g03605 Smso20g01822
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4958175 Smso Smso16g02090 Smso-Chr16:85238661 Smso1g03605 Smso-Chr1:121290993
5025348 Smso Smso1g03605 Smso-Chr1:121290993 Smso20g01822 Smso-Chr20:61674974
5027959 Smso Smso1g03605 Smso-Chr1:121290993 Smso28g00486 Smso-Chr28:13645893
5028299 Smso Smso1g03605 Smso-Chr1:121290993 Smso29g01590 Smso-Chr29:42930415