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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03621 ATGTCATGGTTGTCGATACCCGTCATAATGTTTGGATATACAATTGGTATAATTACAAGGGTTGCAATTGAAATTTCCCCAAATCGGCGTGCAAGACCGTCGGCCTTCGGCCAAAAGTTGCAGACTTCTGAAAGGAGAAAAACGAAGAAGATGAACACAGATTGGTACCACGATGTTCCCTGCTCTTCGATCGCCGTCGAATCCATCATTACCGTCGGAACTGGCGGACTAATCTGGGGCTCATGTGCTGGTTCCTACGACGCCAAGCAAAAAGGCTTGACCGGTATTTCTCGTGCTTCTTTCCTGGCCAAGACCGTCGGCAATTACGGGTTTCAATGTGGACTGTTTGCTGGAATATTTTCGTTTACTCGCTGTGGGATTCGAAGATACCGCAAGAAAAGTGATTGGGTGAATGCTCTAGTTGCAGGTGGGGTTGCAGGGGCAGCCATTGGTGCTGGGACCCGAAACTGGAAGCAGGTTGCAGCCATGACTGCTTTTCTTTCTGGATTTTGTGCCATTGCTGACCAATCAAGAGCTATCTGA 543 48.25 MSWLSIPVIMFGYTIGIITRVAIEISPNRRARPSAFGQKLQTSERRKTKKMNTDWYHDVPCSSIAVESIITVGTGGLIWGSCAGSYDAKQKGLTGISRASFLAKTVGNYGFQCGLFAGIFSFTRCGIRRYRKKSDWVNALVAGGVAGAAIGAGTRNWKQVAAMTAFLSGFCAIADQSRAI 180
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03621 180 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22 52 176 IPR039175 GO:0008320(PANTHER)|GO:0030943(PANTHER)|GO:0042721(InterPro)|GO:0042721(PANTHER)|GO:0045039(PANTHER)|GO:0045039(InterPro)
Smso1g03621 180 Pfam Tim17-Tim22-Tim23-Pmp24 family 65 168 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03621 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337989 Smso28g00479 Smso1g03621
357498 Smso1g03621 Smso28g00479
429049 Smso1g03621 Smso28g00479
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:121563765 Smso28g00479 Smso-Chr28:13331894 wgd