AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso1g03628 | ATGGCTGCTTCCACTAATCTTCTTCATCTTCTTCTTCAAGTCCTGGTGATCACCACCGTGATTCTTCCTCCGGCATCCGCCGGCGTCGCCGATTTCAACTGGCTGTCGAAGCAAGGAGAAGTGTGCAGCGGCTCGATCGCCGAGTGTATGGGCGGAGAAGAGTTGGAGATGGAATCGGAGAGCACGAGGCGTATTTTAGCAACGACAAGGTACATAAGCTATGGTGCGCTGCAAGGGAACAATGTGCCGTGCTCGCAGAGAGGTGCGTCGTATTATAACTGTCGATCCGGTGGTCAGGCTAATCCGTACCAGCGTGGTTGCAGTACCATTACTCGTTGCCGGCGTTGA | 348 | 54.02 | MAASTNLLHLLLQVLVITTVILPPASAGVADFNWLSKQGEVCSGSIAECMGGEELEMESESTRRILATTRYISYGALQGNNVPCSQRGASYYNCRSGGQANPYQRGCSTITRCRR | 115 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso1g03628 | 115 | Pfam | Rapid ALkalinization Factor (RALF) | 53 | 115 | IPR008801 | - | |
| Smso1g03628 | 115 | PANTHER | RAPID ALKALINIZATION FACTOR-LIKE | 12 | 115 | - | GO:0009506(PANTHER)|GO:0019722(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso1g03628 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 141562 | Smso10g00698 | Smso1g03628 | |
| 149187 | Smso1g03628 | Smso20g00809 | |
| 149188 | Smso1g03628 | Smso26g00034 | |
| 337992 | Smso28g00474 | Smso1g03628 | |
| 357495 | Smso1g03628 | Smso28g00474 | |
| 429052 | Smso1g03628 | Smso28g00474 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr18:74552872 | Smso1g03628 | Smso-Chr1:121705525 | dispersed | |
| Smso | Smso-Chr1:121705525 | Smso25g00483 | Smso-Chr25:10537224 | dispersed | |
| Smso | Smso-Chr1:121705525 | Smso10g00698 | Smso-Chr10:7328502 | wgd | |
| Smso | Smso-Chr1:121705525 | Smso20g00809 | Smso-Chr20:14013190 | wgd | |
| Smso | Smso-Chr1:121705525 | Smso26g00034 | Smso-Chr26:387902 | wgd | |
| Smso | Smso-Chr1:121705525 | Smso28g00474 | Smso-Chr28:13098624 | wgd |