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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03629 ATGGCCATCAAACTTTACGGAGCCGCTGGTTCAACCGCAACTCTCCAAGTTCAGGCTTGCCTCGCCGAGAAGGACCTTCACTACGAGTTCGTTTCCATCAACATGAGCTATAAAGAACACAAGACTCCTGAATTCCTTTCCCGTAATCCGTTCGGCCAGGTTCCAGCGTTTGAGGATGGCGATCTCAAGCTGTTTGAATCAAGGGCGATTACGCAATATCTAGCTCACACATATGCGGACAAAGGGAATGACGTGATAATCAAAGATCCAAAGAAGATGGCGATCGTGGCGGTGTGGATCGAAGTGGAGTCTCAAAAATTTGATCCGGCGTGTTCGAAACTGGTGTGGGAGTTAGGTTACAAGCCGATGTTTGGGATGACGAGCGACGATGTGGTGGTAGAAGAGAACGAAAAGAAACTGGAGCAAGTGCTCGACGTGTACGAGTCGCGGTTGTCGCAAAGCAAGTATTTGGGCGGGGATAGTTTCACGTTGGCGGATCTCCACCACCTCCCCGTCATAAAGTACTTGATGGGAACAAAGGCGAAGAGGCTGTTCGAAGCGCGGCCGCATGTTAGTGCGTGGGTTGCCGACATCCAGTCCAGGCCTGCATGGGTGAAAGCAATCACGACTTAA 633 50.87 MAIKLYGAAGSTATLQVQACLAEKDLHYEFVSINMSYKEHKTPEFLSRNPFGQVPAFEDGDLKLFESRAITQYLAHTYADKGNDVIIKDPKKMAIVAVWIEVESQKFDPACSKLVWELGYKPMFGMTSDDVVVEENEKKLEQVLDVYESRLSQSKYLGGDSFTLADLHHLPVIKYLMGTKAKRLFEARPHVSAWVADIQSRPAWVKAITT 210
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03629 210 Pfam Glutathione S-transferase, N-terminal domain 1 75 IPR004045 -
Smso1g03629 210 Gene3D Glutaredoxin 1 86 - -
Smso1g03629 210 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Smso1g03629 210 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 210 IPR010987 -
Smso1g03629 210 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 208 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Smso1g03629 210 Pfam Glutathione S-transferase, C-terminal domain 127 202 IPR004046 -
Smso1g03629 210 SFLD Main.5: Phi-like 1 208 - -
Smso1g03629 210 FunFam Glutathione S-transferase F2 87 208 - -
Smso1g03629 210 FunFam Glutathione S-transferase F2 2 86 - -
Smso1g03629 210 SUPERFAMILY GST C-terminal domain-like 73 208 IPR036282 -
Smso1g03629 210 SUPERFAMILY Thioredoxin-like 2 81 IPR036249 -
Smso1g03629 210 Gene3D - 89 210 - -
Smso1g03629 210 SFLD Main (cytGST) 1 208 - -
Smso1g03629 210 CDD GST-C-Phi 91 208 IPR034347 -
Smso1g03629 210 CDD GST-N-Phi 2 76 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03629 K00799 glutathione S-transferase [EC:2.5.1.18]
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Event-related genes

Select Gene_1 Gene_2 Event_name
141568 Smso10g00703 Smso1g03629
149189 Smso1g03629 Smso20g00814
357494 Smso1g03629 Smso28g00473
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:121728571 Smso20g00814 Smso-Chr20:14122974 dispersed
Smso Smso-Chr1:121728571 Smso1g03630 Smso-Chr1:121750425 tandem
Smso Smso-Chr1:121728571 Smso10g00702 Smso-Chr10:7367359 wgd
Smso Smso-Chr1:121728571 Smso20g00813 Smso-Chr20:14103583 wgd
Smso Smso-Chr1:121728571 Smso26g00032 Smso-Chr26:368825 wgd
Smso Smso-Chr1:121728571 Smso28g00473 Smso-Chr28:13087108 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
SmsoJAKNSE010000055g00003 . 5 222 Glutathione S-transferase gene family AT1G10370 42.009 5.94e-59 184.0
SmsoJAKNSE010000034g00284 . 1 266 Glutathione S-transferase gene family AT1G77290 67.041 3.73e-138 388.0
Smso29g01119 SST 8 218 Glutathione S-transferase gene family AT2G02390 58.294 5.37e-84 247.0
Smso28g00473 SST,WGDA 4 66 Glutathione S-transferase gene family AT2G02930 61.905 1.54e-22 84.0
Smso28g00832 . 5 217 Glutathione S-transferase gene family AT3G09270 45.54 1.51e-62 193.0
Smso28g00834 . 6 224 Glutathione S-transferase gene family AT3G09270 43.379 1.50e-59 185.0
Smso28g01179 . 267 458 Glutathione S-transferase gene family AT5G41240 29.353 2.71e-14 71.2
Smso27g01621 SST,WGDA 2 228 Glutathione S-transferase gene family AT5G41210 59.912 1.12e-102 296.0
Smso27g01622 SST,WGDA 2 230 Glutathione S-transferase gene family AT5G41210 65.939 1.51e-115 328.0
Smso27g01623 SST 2 231 Glutathione S-transferase gene family AT5G41210 61.739 8.13e-105 305.0
Smso27g02018 SST 12 224 Glutathione S-transferase gene family AT5G02790 65.179 1.23e-102 296.0
Smso26g00032 ACH 3 210 Glutathione S-transferase gene family AT4G02520 52.404 2.17e-69 209.0
Smso26g00995 . 20 214 Glutathione S-transferase gene family AT3G09270 50.256 8.79e-63 198.0
Smso26g00996 ACH,WGDA 47 219 Glutathione S-transferase gene family AT3G09270 50.867 2.21e-56 177.0
Smso26g00997 . 7 134 Glutathione S-transferase gene family AT2G29420 55.469 1.07e-49 156.0
Smso26g00998 . 5 219 Glutathione S-transferase gene family AT3G09270 51.163 9.85e-72 216.0
Smso26g01695 . 266 438 Glutathione S-transferase gene family AT5G41240 27.374 6.15e-09 52.8
Smso26g01995 . 4 218 Glutathione S-transferase gene family AT1G10370 46.789 5.95e-65 199.0
Smso26g01998 . 5 217 Glutathione S-transferase gene family AT1G10370 45.327 6.37e-63 194.0
Smso26g02128 . 2 215 Glutathione S-transferase gene family AT1G78380 60.185 1.69e-94 273.0
Smso25g00772 . 1 217 Glutathione S-transferase gene family AT1G17180 55.505 1.07e-87 256.0
Smso25g01175 WGDA 7 211 Glutathione S-transferase gene family AT2G02390 53.171 1.56e-75 225.0
Smso25g02954 . 3 211 Glutathione S-transferase gene family AT3G03190 49.048 1.06e-71 215.0
Smso24g01226 . 3 214 Glutathione S-transferase gene family AT1G78380 49.767 1.10e-70 213.0
Smso24g02736 . 3 226 Glutathione S-transferase gene family AT1G10370 46.491 1.28e-64 201.0
Smso24g02737 . 3 217 Glutathione S-transferase gene family AT1G10370 47.685 9.17e-69 209.0
Smso24g02742 . 5 209 Glutathione S-transferase gene family AT1G10370 38.835 7.92e-51 164.0
Smso24g02743 . 5 209 Glutathione S-transferase gene family AT1G10370 39.32 2.89e-52 167.0
Smso24g02744 . 6 209 Glutathione S-transferase gene family AT1G10370 40.488 3.38e-55 174.0
Smso24g02745 SST 7 223 Glutathione S-transferase gene family AT1G59700 40.183 6.74e-47 153.0
Smso23g00360 SST,WGDA 2 230 Glutathione S-transferase gene family AT5G41210 62.882 5.91e-109 312.0
Smso23g00858 SST 1 204 Glutathione S-transferase gene family AT2G30860 57.353 1.84e-79 233.0
Smso23g00952 . 5 222 Glutathione S-transferase gene family AT1G10370 43.379 1.98e-57 180.0
Smso23g00955 . 5 222 Glutathione S-transferase gene family AT1G10370 41.553 1.92e-58 183.0
Smso23g01047 . 3 217 Glutathione S-transferase gene family AT1G10370 49.074 4.23e-69 210.0
Smso21g00859 ACH,SST 1 212 Glutathione S-transferase gene family AT1G75270 75.117 2.31e-116 329.0
Smso21g02664 . 154 209 Glutathione S-transferase gene family AT5G16710 48.214 5.99e-09 55.5
Smso20g00430 . 5 224 Glutathione S-transferase gene family AT3G09270 40.724 7.82e-49 160.0
Smso20g00813 . 3 212 Glutathione S-transferase gene family AT2G02930 54.028 1.80e-79 235.0
Smso20g00814 ACH,SST 54 260 Glutathione S-transferase gene family AT2G47730 54.808 8.82e-76 227.0
Smso20g00815 . 54 263 Glutathione S-transferase gene family AT2G47730 54.762 3.78e-80 238.0
Smso20g00816 ACH,SST 54 263 Glutathione S-transferase gene family AT2G47730 51.905 3.71e-69 218.0
Smso20g00817 ACH,SST 54 262 Glutathione S-transferase gene family AT2G47730 50.952 1.36e-67 207.0
Smso20g00818 ACH,SST 4 211 Glutathione S-transferase gene family AT4G02520 53.846 1.12e-70 212.0
Smso20g00820 ACH,SST 54 257 Glutathione S-transferase gene family AT2G47730 48.357 1.41e-59 186.0
Smso20g01224 . 8 218 Glutathione S-transferase gene family AT2G29420 46.009 1.04e-60 188.0
Smso18g00835 SST,WGDA 1 155 Glutathione S-transferase gene family AT2G02390 56.25 2.05e-54 170.0
Smso18g00840 . 1 219 Glutathione S-transferase gene family AT2G02390 65.315 2.04e-102 296.0
Smso17g00898 . 116 181 Glutathione S-transferase gene family AT1G10370 43.939 2.45e-14 64.3
Smso17g01420 . 2 216 Glutathione S-transferase gene family AT1G78380 66.977 2.03e-116 330.0
Smso17g01869 SST 1 266 Glutathione S-transferase gene family AT1G77290 67.416 2.12e-139 391.0
Smso17g02531 . 4 176 Glutathione S-transferase gene family AT1G78380 58.382 3.55e-77 228.0
Smso17g03442 . 305 451 Glutathione S-transferase gene family AT5G41240 30.625 4.30e-09 54.7
Smso16g01413 . 4 215 Glutathione S-transferase gene family AT1G78380 55.869 2.25e-85 251.0
Smso16g01414 . 14 215 Glutathione S-transferase gene family AT1G78380 53.431 7.20e-77 228.0
Smso16g01415 . 105 219 Glutathione S-transferase gene family AT1G17180 30.435 3.14e-13 60.5
Smso16g01418 . 122 219 Glutathione S-transferase gene family AT1G17180 54.082 1.13e-31 108.0
Smso16g01599 . 3 219 Glutathione S-transferase gene family AT1G17180 61.927 6.24e-103 296.0
Smso16g01601 . 3 219 Glutathione S-transferase gene family AT1G17180 64.22 1.39e-105 301.0
Smso15g00140 . 9 219 Glutathione S-transferase gene family AT2G02390 52.607 1.26e-75 225.0
Smso15g00852 . 66 132 Glutathione S-transferase gene family AT5G16710 36.765 8.20e-06 45.1
Smso15g01856 . 2 216 Glutathione S-transferase gene family AT1G78380 65.581 8.19e-112 318.0
Smso14g00068 . 3 67 Glutathione S-transferase gene family AT3G62760 52.308 2.10e-20 80.1
Smso13g00090 . 4 218 Glutathione S-transferase gene family AT1G10370 46.296 6.67e-67 204.0
Smso13g00814 . 5 219 Glutathione S-transferase gene family AT3G09270 51.163 2.81e-71 214.0
Smso13g00815 . 5 219 Glutathione S-transferase gene family AT3G09270 53.953 3.14e-75 224.0
Smso13g00816 . 7 219 Glutathione S-transferase gene family AT3G09270 52.582 2.78e-72 217.0
Smso13g00817 . 7 210 Glutathione S-transferase gene family AT2G29420 45.098 4.39e-67 204.0
Smso13g00819 . 5 219 Glutathione S-transferase gene family AT3G09270 47.005 2.20e-65 199.0
Smso13g00820 . 7 143 Glutathione S-transferase gene family AT2G29420 47.445 1.38e-43 141.0
Smso12g00447 SST 9 235 Glutathione S-transferase gene family AT5G02790 66.96 1.58e-111 320.0
Smso12g01509 SST 34 258 Glutathione S-transferase gene family AT5G16710 68.444 7.20e-120 342.0
Smso12g01559 SST 5 211 Glutathione S-transferase gene family AT2G02390 55.556 1.61e-73 220.0
Smso12g01560 SST,WGDA 5 211 Glutathione S-transferase gene family AT2G02390 52.657 3.73e-73 219.0
Smso12g03031 . 267 453 Glutathione S-transferase gene family AT5G41240 29.353 5.44e-11 60.5
Smso12g03502 . 267 477 Glutathione S-transferase gene family AT5G41240 28.326 1.32e-11 63.2
Smso11g01480 SST 5 102 Glutathione S-transferase gene family AT2G02390 51.02 1.64e-30 106.0
Smso11g01481 SST 167 211 Glutathione S-transferase gene family AT2G02390 48.889 1.41e-09 50.1
Smso11g01482 SST,WGDA 5 211 Glutathione S-transferase gene family AT2G02390 56.522 3.65e-75 224.0
Smso11g01544 SST 1 258 Glutathione S-transferase gene family AT5G16710 61.194 1.36e-121 347.0
Smso11g02643 SST 11 214 Glutathione S-transferase gene family AT5G02780 60.455 4.48e-85 252.0
Smso11g02650 SST 59 285 Glutathione S-transferase gene family AT3G55040 66.079 5.15e-105 303.0
Smso10g00376 . 121 211 Glutathione S-transferase gene family AT3G09270 30.435 2.90e-09 50.8
Smso10g00702 ACH,SST 3 212 Glutathione S-transferase gene family AT2G02930 54.976 6.49e-81 238.0
Smso10g00703 ACH,SST 17 260 Glutathione S-transferase gene family AT2G47730 51.429 7.74e-78 239.0
Smso10g00704 ACH,SST 54 229 Glutathione S-transferase gene family AT2G47730 53.409 1.82e-60 187.0
Smso10g00705 ACH,SST 4 211 Glutathione S-transferase gene family AT4G02520 53.365 1.33e-71 214.0
Smso10g00706 ACH,SST 54 257 Glutathione S-transferase gene family AT2G47730 46.948 2.28e-57 181.0
Smso10g01041 . 7 207 Glutathione S-transferase gene family AT2G29420 47.783 4.80e-65 199.0
Smso10g01042 ACH,WGDA 125 211 Glutathione S-transferase gene family AT3G09270 40.449 5.61e-18 75.9
Smso10g01220 . 267 462 Glutathione S-transferase gene family AT5G41240 29.245 6.74e-10 57.8
Smso10g03378 . 3 219 Glutathione S-transferase gene family AT1G17180 63.761 4.79e-104 298.0
Smso10g03517 . 4 216 Glutathione S-transferase gene family AT1G78380 53.953 3.94e-81 240.0
Smso10g03518 . 3 215 Glutathione S-transferase gene family AT1G78380 51.402 2.96e-79 235.0
Smso10g03519 . 3 215 Glutathione S-transferase gene family AT1G78380 51.628 7.10e-80 236.0
Smso10g03520 . 3 215 Glutathione S-transferase gene family AT1G78380 57.009 2.44e-86 253.0
Smso9g01093 SST,WGDA 1 219 Glutathione S-transferase gene family AT2G02390 63.063 2.83e-101 291.0
Smso9g01094 . 51 150 Glutathione S-transferase gene family AT2G02390 43.0 1.81e-18 75.1
Smso8g01819 SST 1 266 Glutathione S-transferase gene family AT1G77290 66.292 5.06e-137 385.0
Smso7g01052 . 9 217 Glutathione S-transferase gene family AT2G02390 55.981 1.01e-81 241.0
Smso7g01053 SST 9 217 Glutathione S-transferase gene family AT2G02390 55.981 1.01e-81 241.0
Smso7g01054 . 8 218 Glutathione S-transferase gene family AT2G02390 58.768 4.19e-86 252.0
Smso6g00212 . 5 209 Glutathione S-transferase gene family AT1G10370 39.806 6.58e-52 166.0
Smso6g00213 . 5 209 Glutathione S-transferase gene family AT1G10370 39.806 2.20e-53 170.0
Smso6g00216 SST 147 209 Glutathione S-transferase gene family AT1G10370 38.095 1.88e-16 69.3
Smso6g00217 SST 7 161 Glutathione S-transferase gene family AT1G59700 45.513 1.50e-41 137.0
Smso6g00221 . 5 209 Glutathione S-transferase gene family AT1G10370 40.777 2.84e-48 160.0
Smso6g01887 . 3 216 Glutathione S-transferase gene family AT1G78380 48.848 8.41e-70 211.0
Smso4g00159 . 267 451 Glutathione S-transferase gene family AT5G41240 29.064 3.36e-11 61.6
Smso4g00868 ACH,SST 1 212 Glutathione S-transferase gene family AT1G75270 73.709 3.32e-114 323.0
Smso4g01019 . 267 438 Glutathione S-transferase gene family AT5G41240 30.508 2.10e-13 67.8
Smso4g01901 ACH,SST 273 461 Glutathione S-transferase gene family AT5G41240 30.0 7.47e-15 74.3
Smso3g02006 SST,WGDA 2 228 Glutathione S-transferase gene family AT5G41210 59.912 5.86e-103 296.0
Smso3g02007 SST,WGDA 2 230 Glutathione S-transferase gene family AT5G41210 65.502 2.18e-115 328.0
Smso3g02008 SST 2 238 Glutathione S-transferase gene family AT5G41210 59.916 1.04e-106 306.0
Smso3g02414 SST 12 235 Glutathione S-transferase gene family AT5G02790 64.103 8.68e-106 304.0
Smso2g00599 SST,WGDA 2 230 Glutathione S-transferase gene family AT5G41210 62.882 8.12e-109 311.0
Smso2g01592 . 1 204 Glutathione S-transferase gene family AT2G30860 69.608 6.01e-109 310.0
Smso2g01593 SST 1 204 Glutathione S-transferase gene family AT2G30860 57.843 1.14e-79 234.0
Smso2g01653 . 5 212 Glutathione S-transferase gene family AT3G09270 44.34 7.29e-52 165.0
Smso2g01765 . 6 209 Glutathione S-transferase gene family AT1G10370 45.854 1.23e-58 183.0
Smso2g01771 . 5 222 Glutathione S-transferase gene family AT1G10370 42.922 1.62e-59 186.0
Smso2g01917 . 3 217 Glutathione S-transferase gene family AT1G10370 48.611 8.17e-68 206.0
Smso1g00913 . 6 224 Glutathione S-transferase gene family AT3G09270 35.16 6.48e-38 129.0
Smso1g00914 . 5 217 Glutathione S-transferase gene family AT3G09270 42.791 1.56e-57 180.0
Smso1g02180 . 1 214 Glutathione S-transferase gene family AT1G17180 54.884 1.40e-85 251.0
Smso1g03629 ACH,SST 3 209 Glutathione S-transferase gene family AT1G02920 59.903 1.42e-88 258.0
Smso1g03630 ACH,SST,WGDA 3 203 Glutathione S-transferase gene family AT1G02930 59.406 7.21e-89 258.0
Smso1g03886 . 1 211 Glutathione S-transferase gene family AT3G03190 55.924 7.09e-84 246.0