AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03644 ATGGCGATCGCCGTCGCATCTTCCTGGTTTAATGCGCTCGCCGCCACCGGTACTCCTCGCTACACAGTCTCCTCCCAACGCCTATTCTCCTCGCCGCAGATATCAGCTACTCGGTTAATCATTCCTAAAGCTGCGAGCAAGAGTCAAAATCCGAAGAAGAGAACTCCGAAGGAACACGCTCGTAAATCATCACCTGAGAAAGAAGCTAATGTTCAAAAGCTTTCAAGAAGGTCAAGAGATGAAAGACAATATTCAAATGCTGATGATTACAATGATAACAAAAATGCAGAACAACCTCAGTCAACCGCCTTCAAGTCGTTTGGTACACAGAGAAAAAACGCAAAAGGTTTTATGGGTAACTTGAAGGATCAGCAGGTCGACACTGCTAAAATTCAAGATGCTTCTTTTCTTAATGCAGTTGTGAAGGTTTATTGTACTCATACTGCACCTGATTATTCCCTCCCTTGGCAAAAGCAAAGACAATATACAAGTACAGGAAGTGCTTTCATGATTGGTGATGGAAAGCTTTTGACAAATGCTCATTGTGTTGAACACAACACACAAGTCAAAGTCAAGAGAAGGGGAGATGATACCAAGTATGTGGCTAAGGTTTTAGCTAAAGGCATGGAATGTGACATAGCTTTGCTTTCAGTGGAAAATGAGAAATTCTGGGAAGGAGCCGAGCCACTTCAGTTCGGCCATTTGCCTCGTCTACAGGATCCAGTTACTGTTGTAGGGTATCCACTTGGGGGAGACACCATTTCAGTGACCAAAGGAGTTGTATCTCGAATAGAGGTTACCTCCTATGCTCATGGATCAGCTGAATTGTTGGGCATTCAAATTGATGCAGCAATTAATCCTGGTAATAGTGGTGGTCCTGCTTTCAATGATCAGGGAGAATGCATCGGTGTGGCATTTCAGGTGTACAGGTCTGATGATGTTGAAAACATTGGGTATGTAATTCCAACAACGGTTGTGTCTCATTTTCTGGATGATTATGAGAGAAACGGGAAGTACACTGGTTTCCCTTCCCTTGGAATATTATTGCAAAAGTTAGAGAATCCAGCTTTACGTGCCTGCTTAAAAGTGCCATCTAACGAGGGTGTACTTGTCCGCCGCGTGGAACCCACTTCTGGTGCCAGTAATGTCTTGAAGGAGGGGGATGTAATTGTAAGCTTTGATGGTGTAGAAGTTGGGTCAGAAGGGACAGTCCCATTTCGATCAACTGAACGCATTGCGTTCCGCTACCTCATAAGTCAAAAATTCACGGGGGACCTAGCAGAGCTTGGTATAATCAGATCAGGGGCTTTCATGAAAGTTAACACTGCTATGAAGCCGCGTGTTCATTTGGTACCGTATCATATTGAAGGGGGTCAGCCATCATACTTGATAGTAGCTGGCTTAGTTTTTACTCCTCTGTCAGAACCACTGATAGACGAGGAATGTGAAGATAGCATAGGGTTAAAATTGTTGACAAAGGCACGGTACTCCATGGCAAGGTTCAAAGGAGAACAGATTGTGATCTTATCACAGGTATTGGCAAATGAAGTTAACATCGGGTACGAGGGTATGAGCAACGAGCAGGTTCTGAAGTTCAATGGAACTCGAATAAAGAATATTCACCATCTTGCTAATCTTGTCGATTCATGCAAGGACAAGTACTTGATTTTTGAATTTGAAGACAATTATCTTGCTGTTTTAGAGAGAGAAGCTTCCTCGGCTGCCTCACCCTGCATTCTTAAAGATTATGGCATACCATCAGAGAGATCCTCTGATCTTCTAGAACCATACGTGGACCCCGTTGGTGAAAACCAAGTACTCGAACACCATGATCTTGGTGACAGTCCGGTCACAAATTCAGATTTTGGGTTTGACGGGCTTCAATGGGCTTGA 1893 43.79 MAIAVASSWFNALAATGTPRYTVSSQRLFSSPQISATRLIIPKAASKSQNPKKRTPKEHARKSSPEKEANVQKLSRRSRDERQYSNADDYNDNKNAEQPQSTAFKSFGTQRKNAKGFMGNLKDQQVDTAKIQDASFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGDGKLLTNAHCVEHNTQVKVKRRGDDTKYVAKVLAKGMECDIALLSVENEKFWEGAEPLQFGHLPRLQDPVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSAELLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSDDVENIGYVIPTTVVSHFLDDYERNGKYTGFPSLGILLQKLENPALRACLKVPSNEGVLVRRVEPTSGASNVLKEGDVIVSFDGVEVGSEGTVPFRSTERIAFRYLISQKFTGDLAELGIIRSGAFMKVNTAMKPRVHLVPYHIEGGQPSYLIVAGLVFTPLSEPLIDEECEDSIGLKLLTKARYSMARFKGEQIVILSQVLANEVNIGYEGMSNEQVLKFNGTRIKNIHHLANLVDSCKDKYLIFEFEDNYLAVLEREASSAASPCILKDYGIPSERSSDLLEPYVDPVGENQVLEHHDLGDSPVTNSDFGFDGLQWA 630
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03644 630 PRINTS HtrA-DegQ protease family signature 174 186 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Smso1g03644 630 PRINTS HtrA-DegQ protease family signature 275 292 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Smso1g03644 630 PRINTS HtrA-DegQ protease family signature 383 395 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Smso1g03644 630 PRINTS HtrA-DegQ protease family signature 196 216 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Smso1g03644 630 Gene3D - 121 223 IPR043504 -
Smso1g03644 630 PANTHER - 46 597 - GO:0004252(PANTHER)
Smso1g03644 630 Pfam Trypsin-like peptidase domain 166 304 - -
Smso1g03644 630 FunFam protease Do-like 9 225 335 - -
Smso1g03644 630 Gene3D - 346 449 IPR036034 GO:0005515(InterPro)
Smso1g03644 630 MobiDBLite consensus disorder prediction 59 88 - -
Smso1g03644 630 Pfam PDZ domain 451 592 IPR041517 -
Smso1g03644 630 MobiDBLite consensus disorder prediction 89 105 - -
Smso1g03644 630 SUPERFAMILY Trypsin-like serine proteases 136 338 IPR009003 -
Smso1g03644 630 FunFam Protease Do-like 9 122 223 - -
Smso1g03644 630 ProSiteProfiles PDZ domain profile. 330 398 IPR001478 GO:0005515(InterPro)
Smso1g03644 630 MobiDBLite consensus disorder prediction 43 105 - -
Smso1g03644 630 SUPERFAMILY PDZ domain-like 366 445 IPR036034 GO:0005515(InterPro)
Smso1g03644 630 CDD PDZ-serine-protease 343 441 - -
Smso1g03644 630 Gene3D - 450 599 IPR046449 -
Smso1g03644 630 Gene3D - 235 345 IPR043504 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03644 K25896 protease Do-like 2, chloroplastic [EC:3.4.21.-]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:122103052 Smso3g00571 Smso-Chr3:11104730 dispersed
Smso Smso-Chr1:122103052 Smso27g00546 Smso-Chr27:8691527 transposed