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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03657 ATGGCGAAAAAGCTCGTCAAATACTCCGTCGTGGACGCGTTTACTGACAACGCGTTTAAAGGAAATCCGGCGGCGGTGTGCTGGTTAGAGGACACAGTGAAGGACGATAAGTGGTTACAATCAGTTGCAACTGAATTCAACCTTCCGACGACGGGTTACTTGACTCCGATTGTTGATCACGGCTCACAGAACCCTAGATTCCACCTCAGATGGTTCACTCCTGCATCTGAGCCTCTCACTTTCTTTTCCGATAACAAGATCAATGGTGAATCACATGACAGCTTCTACATAGAATTGGATTTCCCTGTTGTGCCGGTTTCAGATTTCAATGATCTTGATGCTTCTGCAGTTTCAGAAATGTTAAATGGTGTTGCTGTTGTTGATGTTCTAAAGAAGAATGCATATAATGACATCATTGTGGTGCTTCTATCAGGAGAAGAAGTTGCAGACTTGAAGCCCCGATTTGATAAGATCAAAGAAGCTTCAGGTAGAGGGATAATAATTACAGCACCCGCACCTAAGGGGTCAGGGTTTGATTTCTATTCGCGCTTTTTCTGCCCTAAATATGGAGTTGATGAGGATCCTGTTTGCGGGAGTGCCCATTGCGCCTTAGTAACCTATTGGCATGAGAAGCTGGGGAAATGTGAATTTGTTGCATATCAGGCATCGCGTAGAAGTGGCATATTGCATGTTCATCTTGATAAGCAGCATCAAAGAGTACTGCTTCGAGGTAAAGCTACCACAGTCATGGAAGGGTCTATTTTGGTCTAA 771 44.36 MAKKLVKYSVVDAFTDNAFKGNPAAVCWLEDTVKDDKWLQSVATEFNLPTTGYLTPIVDHGSQNPRFHLRWFTPASEPLTFFSDNKINGESHDSFYIELDFPVVPVSDFNDLDASAVSEMLNGVAVVDVLKKNAYNDIIVVLLSGEEVADLKPRFDKIKEASGRGIIITAPAPKGSGFDFYSRFFCPKYGVDEDPVCGSAHCALVTYWHEKLGKCEFVAYQASRRSGILHVHLDKQHQRVLLRGKATTVMEGSILV 256
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03657 256 SUPERFAMILY Diaminopimelate epimerase-like 7 255 - -
Smso1g03657 256 PIRSF Ismrse-PhzF 113 256 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Smso1g03657 256 PIRSF Ismrse-PhzF 4 80 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Smso1g03657 256 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 111 244 - -
Smso1g03657 256 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 1 80 - -
Smso1g03657 256 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 6 77 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Smso1g03657 256 Pfam Phenazine biosynthesis-like protein 90 252 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Smso1g03657 256 Pfam Phenazine biosynthesis-like protein 11 77 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03657 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
338003 Smso28g00452 Smso1g03657
357484 Smso1g03657 Smso28g00452
429068 Smso1g03657 Smso28g00452
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:122379984 Smso28g00452 Smso-Chr28:12067288 dispersed
Smso Smso-Chr1:122379984 Smso1g03658 Smso-Chr1:122384711 tandem
Smso Smso-Chr1:122379984 Smso28g00451 Smso-Chr28:12063152 wgd