Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso1g03657 | ATGGCGAAAAAGCTCGTCAAATACTCCGTCGTGGACGCGTTTACTGACAACGCGTTTAAAGGAAATCCGGCGGCGGTGTGCTGGTTAGAGGACACAGTGAAGGACGATAAGTGGTTACAATCAGTTGCAACTGAATTCAACCTTCCGACGACGGGTTACTTGACTCCGATTGTTGATCACGGCTCACAGAACCCTAGATTCCACCTCAGATGGTTCACTCCTGCATCTGAGCCTCTCACTTTCTTTTCCGATAACAAGATCAATGGTGAATCACATGACAGCTTCTACATAGAATTGGATTTCCCTGTTGTGCCGGTTTCAGATTTCAATGATCTTGATGCTTCTGCAGTTTCAGAAATGTTAAATGGTGTTGCTGTTGTTGATGTTCTAAAGAAGAATGCATATAATGACATCATTGTGGTGCTTCTATCAGGAGAAGAAGTTGCAGACTTGAAGCCCCGATTTGATAAGATCAAAGAAGCTTCAGGTAGAGGGATAATAATTACAGCACCCGCACCTAAGGGGTCAGGGTTTGATTTCTATTCGCGCTTTTTCTGCCCTAAATATGGAGTTGATGAGGATCCTGTTTGCGGGAGTGCCCATTGCGCCTTAGTAACCTATTGGCATGAGAAGCTGGGGAAATGTGAATTTGTTGCATATCAGGCATCGCGTAGAAGTGGCATATTGCATGTTCATCTTGATAAGCAGCATCAAAGAGTACTGCTTCGAGGTAAAGCTACCACAGTCATGGAAGGGTCTATTTTGGTCTAA | 771 | 44.36 | MAKKLVKYSVVDAFTDNAFKGNPAAVCWLEDTVKDDKWLQSVATEFNLPTTGYLTPIVDHGSQNPRFHLRWFTPASEPLTFFSDNKINGESHDSFYIELDFPVVPVSDFNDLDASAVSEMLNGVAVVDVLKKNAYNDIIVVLLSGEEVADLKPRFDKIKEASGRGIIITAPAPKGSGFDFYSRFFCPKYGVDEDPVCGSAHCALVTYWHEKLGKCEFVAYQASRRSGILHVHLDKQHQRVLLRGKATTVMEGSILV | 256 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso1g03657 | 256 | SUPERFAMILY | Diaminopimelate epimerase-like | 7 | 255 | - | - | |
| Smso1g03657 | 256 | PIRSF | Ismrse-PhzF | 113 | 256 | IPR003719 | GO:0003824(InterPro)|GO:0009058(InterPro) | |
| Smso1g03657 | 256 | PIRSF | Ismrse-PhzF | 4 | 80 | IPR003719 | GO:0003824(InterPro)|GO:0009058(InterPro) | |
| Smso1g03657 | 256 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 111 | 244 | - | - | |
| Smso1g03657 | 256 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 1 | 80 | - | - | |
| Smso1g03657 | 256 | PANTHER | PHENAZINE BIOSYNTHESIS PROTEIN | 6 | 77 | IPR003719 | GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER) | |
| Smso1g03657 | 256 | Pfam | Phenazine biosynthesis-like protein | 90 | 252 | IPR003719 | GO:0003824(InterPro)|GO:0009058(InterPro) | |
| Smso1g03657 | 256 | Pfam | Phenazine biosynthesis-like protein | 11 | 77 | IPR003719 | GO:0003824(InterPro)|GO:0009058(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso1g03657 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 338003 | Smso28g00452 | Smso1g03657 | |
| 357484 | Smso1g03657 | Smso28g00452 | |
| 429068 | Smso1g03657 | Smso28g00452 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr1:122379984 | Smso28g00452 | Smso-Chr28:12067288 | dispersed | |
| Smso | Smso-Chr1:122379984 | Smso1g03658 | Smso-Chr1:122384711 | tandem | |
| Smso | Smso-Chr1:122379984 | Smso28g00451 | Smso-Chr28:12063152 | wgd |