AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03661 ATGGCGACTCCCGATGTTTTTCTGCGAGGCGAACACGATATTTTCTCGTCGTCGTTTCTATTTGATATCACCAAAGGCGATACTAAATCCCGAGGGCTTGCGCTGGAGAAAAAAATTGAATATCTTGAGAGCTTGAACGACAGAGTTAGCAACAGACGAGCACGTAGATGGATAAATGACCGTATACTGTTGGAGCTTGTACCTCGTTTGACTGGAGATGAAATTAGAGGCTTATTTACTCCACCACCTTGGGGTCATGAGGCACGGCCATCACCATTTTGCATGACAAATGTTGGGGAGTGGGACAAATTTAGGAATATAGACATGGATAAAGAGGCTGGTGCGATAGAGGCCCTTAAAGGTTCCTCATCAAAGAAGAAAAGTCATGTGGATGCTGATAAGATAGATGCGTTGACTGCATGGCACAGGGTTGACTGCAAAACTAGAGATGCGTTTCGTCGAAGCTTTCTTCCAGAACTTGTTGATGGTTATGAGGAGAACATACGGGCCTTTGTCTCAGAGGCAGGTGGCGAGGAGGTTCTTGTACTACGCGTCCAAGACCCTTTCCATAGGTTATTACTTCATGGTGTTTGCGAGTTCTACAATTTGGTCTCCACAACCGAATCAGAAACCGAAGGTACAAAGGTGTTGAAGATGACCAAAATCAAGAAGAAAAAAGCGGGCAATAACGACCTTCCAACCATCACTCTTTGCCGGTTTCTGAAAATGGCAAAAGGCGGGTTTTGGTAG 750 45.2 MATPDVFLRGEHDIFSSSFLFDITKGDTKSRGLALEKKIEYLESLNDRVSNRRARRWINDRILLELVPRLTGDEIRGLFTPPPWGHEARPSPFCMTNVGEWDKFRNIDMDKEAGAIEALKGSSSKKKSHVDADKIDALTAWHRVDCKTRDAFRRSFLPELVDGYEENIRAFVSEAGGEEVLVLRVQDPFHRLLLHGVCEFYNLVSTTESETEGTKVLKMTKIKKKKAGNNDLPTITLCRFLKMAKGGFW 249
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03661 249 PANTHER R3H DOMAIN-CONTAINING PROTEIN 4 20 246 IPR039629 -
Smso1g03661 249 CDD R3H 161 215 - -
Smso1g03661 249 SUPERFAMILY R3H domain 141 223 IPR036867 GO:0003676(InterPro)
Smso1g03661 249 Pfam R3H-associated N-terminal domain 35 154 IPR025952 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03661 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
429071 Smso1g03661 Smso20g01730
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:122400515 Smso20g01730 Smso-Chr20:58504880 wgd
Smso Smso-Chr1:122400515 Smso29g01512 Smso-Chr29:41527865 wgd