Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Smso1g03672	ATGGGTAGGCCGTGTGTAGAACAATCGAGGCCGTCTTCATCATCGCCGTCGTCGGTGACGACATCGACGTCGATTACCGAGACGGTGAACGGCGAGCATGATTTTAAGATTTCGGGGTATTCGTTATCGAAGGGGATTGGGATTGGGAAGTATGTAGCGTCTGATACGTTTACGGTTGGTGGATATTCGTGGGCGATTTATTTTTATCCTGATGGGAAGAGCCTGGAGGATAACGCGAGTTATGTGTCGTTGTTCATTGCGTTGGCTAGTGATGGATCTGATGTGCGAGCGCTTTTTGAGTTGACACTAATTGACCAGAGTGGGAAGGAGAGGCATAAGGTTCATAGCCATTTTGGAAGAGCGTTGGAGAGTGGACCGTATACTCTTAAGTACAAGGGTAGTATGTGGGGATACAAGCGGTTTTTCAAAAGATCTGCTTTAGAAACTTCAGACTACTTAAAAGACGATTGCCTTCAAGTTCATTGCTGTGTTGGAGTTGTTAGGTCCCACACGGAGGGTCCTAAGTCCTACTCTATCCATGTGCAACCTTCTGATATCGGGCAGCATTTCGGGCAGCTTCTGGAATGTGGAAAGGGGACTGATGTTTCTTTTGAAGTGAATGGAGAAACCTTTGCTGCCCATAAATTGGTTCTTGCCGCCCGCTCACCTGTTTTCAGGGCTCAACTTTTTGGTCCAATGAAAGATCAAAATGTCCAGTGTATCAAAGTTGAAGACATAGAAGCCCCTGTTTTTAAGGCGCTACTTCATTTTACATACTGGGACAAACTGCCCGACATGGAAGAGCTAACGGGCCTGAATACAAAATGGGCTTCAACATTGATGTATCAGCATCTGCTCGCAGCTGCTGATCGGTATGGATTAGAGAGGCTTTGTATGTTATGTGAATCTAATCTTTGTGAAGATGTTGCCATTAATACAGTTGCAACAACATTAGCATTGGCTGAACAGCACCATTGTCTCCAGTTAAAGTCCGTGTGTCTTAAATTCGTTGCTTTGCCTGAAAATCTCAGAGCTGTGATGCAGACGGACGGGTTTGACTACTTAAAAGAAAGCTGTTCGCACGTGCTGACAGAGCTATTGGAACACGTGGCTAGAAACAACGAGCATTCGCTAGCCATATGCTGTCACCCGAATGCAATCCTACTTGATGGAAGTGATGTTCACGGTAGAAGGGTTAAACCCAGATTGTAA	1212	45.54	MGRPCVEQSRPSSSSPSSVTTSTSITETVNGEHDFKISGYSLSKGIGIGKYVASDTFTVGGYSWAIYFYPDGKSLEDNASYVSLFIALASDGSDVRALFELTLIDQSGKERHKVHSHFGRALESGPYTLKYKGSMWGYKRFFKRSALETSDYLKDDCLQVHCCVGVVRSHTEGPKSYSIHVQPSDIGQHFGQLLECGKGTDVSFEVNGETFAAHKLVLAARSPVFRAQLFGPMKDQNVQCIKVEDIEAPVFKALLHFTYWDKLPDMEELTGLNTKWASTLMYQHLLAAADRYGLERLCMLCESNLCEDVAINTVATTLALAEQHHCLQLKSVCLKFVALPENLRAVMQTDGFDYLKESCSHVLTELLEHVARNNEHSLAICCHPNAILLDGSDVHGRRVKPRL	403

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Smso1g03672	403	Gene3D	Potassium Channel Kv1.1; Chain A	176	304	IPR011333	-
	Smso1g03672	403	PANTHER	BTB-POZ AND MATH DOMAIN-CONTAINING PROTEIN 1	21	371	IPR045005	GO:0016567(InterPro)
	Smso1g03672	403	Pfam	MATH domain	33	164	IPR002083	GO:0005515(InterPro)
	Smso1g03672	403	SMART	BTB-4	200	309	IPR000210	GO:0005515(InterPro)
	Smso1g03672	403	SUPERFAMILY	TRAF domain-like	27	166	-	-
	Smso1g03672	403	FunFam	BTB-POZ and math domain 1	176	303	-	-
	Smso1g03672	403	SUPERFAMILY	POZ domain	177	307	IPR011333	-
	Smso1g03672	403	Gene3D	-	309	384	-	-
	Smso1g03672	403	Pfam	BTB-POZ domain	190	307	IPR000210	GO:0005515(InterPro)
	Smso1g03672	403	SMART	math-3	35	147	IPR002083	GO:0005515(InterPro)
	Smso1g03672	403	CDD	MATH	31	164	IPR002083	GO:0005515(InterPro)
	Smso1g03672	403	CDD	BTB-POZ-BPM-plant	186	306	-	-
	Smso1g03672	403	ProSiteProfiles	BTB domain profile.	200	267	IPR000210	GO:0005515(InterPro)
	Smso1g03672	403	ProSiteProfiles	MATH-TRAF domain profile.	30	164	IPR002083	GO:0005515(InterPro)
	Smso1g03672	403	CDD	BACK-AtBPM-like	306	368	IPR034090	-
	Smso1g03672	403	Gene3D	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	29	168	IPR008974	GO:0005515(InterPro)
	Smso1g03672	403	MobiDBLite	consensus disorder prediction	1	25	-	-
	Smso1g03672	403	MobiDBLite	consensus disorder prediction	7	25	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Smso1g03672	K10523	speckle-type POZ protein

Event-related genes

Select	Gene_1	Gene_2	Event_name
	149206	Smso1g03672	Smso21g02210
	429078	Smso1g03672	Smso20g01735

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Smso	Smso-Chr1:122548542	Smso4g02456	Smso-Chr4:42677577	dispersed
	Smso	Smso-Chr1:122548542	Smso20g01735	Smso-Chr20:58593086	wgd
	Smso	Smso-Chr1:122548542	Smso29g01518	Smso-Chr29:41624700	wgd