AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03710 ATGGCTTCTGTTGGGTTGAGTTTTCTGAAAGTTCTTGAGAACCCATCAATGGGTTCCAAGAATCTTGAAGTAAACGACGACGTTTATGTCCATCCAATGGTCAAACGGTCAGCGTCGGCATTGAGTACCAAGAGCTTAGAAATGTGTACGGAGAGTTTAGGAAGTGAAACCGGGAGTGAAAGTGGTGATGAATTTTGTGTAATTTCAATGGAGGAAAGGGAGAGATTGAGAGGAATTCAAAAGTCAAAGTGCCGGAATTTTGACCGGAAAGTTCGCCGGAATGACTTTCCTCCGCCGTTGACTTCCATCAGCGGGTCCCACGGAGCGGTGAAGGTGAGGCAGCATAGGGAAGGTGGGCGGTTGGTTATTAAAGCTGTTAGCTTTTCTAACTGTGGTACACATTTTCAAGCGGAACGTACAAATGGGAGACTTAAGCTTTCTTTGTTGAGGGACCGTTTTGTAAATTATGAAAGTGGAAGGGTTGAAATGGAAGATTATGAAGAAGGTGGTGAAGTGGAATTAGATGAGGAAGCGGAGGAGGTGGTGGGTGTGGATGTGGCTGCGGCGGAGGAGGAAGAAGAGGGTGGTCGGCGGGGGGATATGGACGGAAACCGGCGGCGGATTGCCGGAAAAGGGGAGTTGAAAATGCCAACAAGGTGCAAGGAAGGTGGAAATAGGAACAAAGTGTTTACAAACTGGGGTTCTTCTCCGGTGGCAATTTCTTGA 726 47.66 MASVGLSFLKVLENPSMGSKNLEVNDDVYVHPMVKRSASALSTKSLEMCTESLGSETGSESGDEFCVISMEERERLRGIQKSKCRNFDRKVRRNDFPPPLTSISGSHGAVKVRQHREGGRLVIKAVSFSNCGTHFQAERTNGRLKLSLLRDRFVNYESGRVEMEDYEEGGEVELDEEAEEVVGVDVAAAEEEEEGGRRGDMDGNRRRIAGKGELKMPTRCKEGGNRNKVFTNWGSSPVAIS 241
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03710 241 MobiDBLite consensus disorder prediction 189 241 - -
Smso1g03710 241 MobiDBLite consensus disorder prediction 190 222 - -
Smso1g03710 241 PANTHER FANTASTIC FOUR-LIKE PROTEIN (DUF3049) 6 234 IPR021410 -
Smso1g03710 241 Pfam Fantastic Four meristem regulator 95 148 IPR046431 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03710 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
141621 Smso10g00754 Smso1g03710
149208 Smso1g03710 Smso20g00872
338013 Smso28g00432 Smso1g03710
357474 Smso1g03710 Smso28g00432
429087 Smso1g03710 Smso20g01744
429088 Smso1g03710 Smso28g00432
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr12:75405474 Smso1g03710 Smso-Chr1:123593530 dispersed
Smso Smso-Chr1:123593530 Smso10g00754 Smso-Chr10:8042064 wgd
Smso Smso-Chr1:123593530 Smso20g00872 Smso-Chr20:15057224 wgd
Smso Smso-Chr1:123593530 Smso20g01744 Smso-Chr20:59355213 wgd
Smso Smso-Chr1:123593530 Smso28g00432 Smso-Chr28:11535090 wgd
Smso Smso-Chr1:123593530 Smso29g01527 Smso-Chr29:41847404 wgd