AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03717 ATGCAAATCCGATTGGATCAGGAAATCCAAAGTCCAAATCGTAAAAAGTCGCGAATTCTCTGGAAACCACCACAATCGATGGCTACACGTGTCCTTCTACCACAATTCAATTCTACCTTCACCAATACCACCATTTTCCTGAGCCTAAACCCCCGTCTACCTACCACCACCAGAAGCCGATTCTCAGTTCTCTCAATGGCGGAATCCAACCGTACCACCGTCCTCGTCACCGGAGCTGGCGGCAGAACTGGTCAGATAGTTTATAAGAAGCTGAAGGAGAGGTCAGGGGAGTATATTGCGCGAGGATTGGTTAGAACGGAGGAGAGTAAGGAGAAAATTGGTGGAGACGACGACGTTTTGATAGGAGATATAAGGAATGTGGACAGCGTTGTTCCTGCTGTTGAAGGCGTAGATGCTGTTGTGATTCTGACGAGTGCTGTCCCCAAAATGAAACCTGGTTTTGATCCAAGTAAAGGTGGAAGGCCTGAATTCTATTTTGAAGAGGGATCATATCCTGAACAAGTTGACTGGGAAGGGCAAAAGAATCAGATTGATGCTGCTAAAGCTGCTGGAGTGAAGCAAATTGTTCTTGTTGGCTCCATGGGTGGAACCAATCTTAACCACCCTTTAAACAGCCTGGGAAACGGGAATATACTGGTCTGGAAGAGAAAGGCTGAACAGTATCTAGCAGACTCCGGGATTCCATACACCATTATAAGGGCTGGGGGTTTGCAAGACAAGGAAGGTGGTGTTCGGGAGCTGCTAGTCGGAAAAGATGACGAGCTTCTCGAGACTGAAACCAGAACCATTGCCAGACCCGATGTGGCTGAAGTCTGTATACAGGCGTTGCAATTCGAGGAGGCGAAATTCAAGGCGTTTGATCTTGCATCCAAACCCGAGGGAAGTGGAACGCCGACAAAAGACTTCAAAAGCTTATTTTCCCATGTCACTACTCGGTTTTAA 963 47.35 MQIRLDQEIQSPNRKKSRILWKPPQSMATRVLLPQFNSTFTNTTIFLSLNPRLPTTTRSRFSVLSMAESNRTTVLVTGAGGRTGQIVYKKLKERSGEYIARGLVRTEESKEKIGGDDDVLIGDIRNVDSVVPAVEGVDAVVILTSAVPKMKPGFDPSKGGRPEFYFEEGSYPEQVDWEGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGVRELLVGKDDELLETETRTIARPDVAEVCIQALQFEEAKFKAFDLASKPEGSGTPTKDFKSLFSHVTTRF 320
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03717 320 Gene3D - 69 320 - -
Smso1g03717 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 72 297 IPR036291 -
Smso1g03717 320 CDD SDR-a5 73 295 - -
Smso1g03717 320 PANTHER NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED 67 320 IPR044163 GO:0009507(PANTHER)|GO:0016491(InterPro)
Smso1g03717 320 Pfam NAD(P)H-binding 78 284 IPR016040 -
Smso1g03717 320 FunFam Uncharacterized protein At5g02240 70 320 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03717 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
338016 Smso28g00429 Smso1g03717
357471 Smso1g03717 Smso28g00429
429094 Smso1g03717 Smso28g00429
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:13348366 Smso1g03717 Smso-Chr1:123711385 dispersed
Smso Smso-Chr1:123711385 Smso28g00999 Smso-Chr28:47267887 dispersed
Smso Smso-Chr1:123711385 Smso28g00429 Smso-Chr28:11446125 wgd