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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03731 ATGAGCAACGTCGCCGTAGACACATTGATGTCAGATTTCCTCCGCAAATCCGGCGGTGTTGCGCTGATCGACGGCGGACTTGCGACGGAGCTTGAACGGTACGGCGCAGACCTTAACGATCCACTCTGGAGCGCCAAATGTCTCCTGACTTCTCCTCACCTTATTCGTCAGGTACACCTTGATTATCTTGAAGCTGGTGCAGATATAATAATTACAGCATCTTACCAGGCTACCATTCAAGGGTTTGAGGCTAAAGGCTATTCTTCAGAAGATGGCGAGTCCATGCTTAGAAAAAGTGTAGAAATTGCTTGTGAAGCAAGGGAATTATATCATCAAAGATGCTGTGAATCTTCAGTTGATTATACTGGTGATGGTAGAATTTTCAAGCAACGTCCTATTTTAGTTGCTGCGTCTGTAGGGAGTTATGGGGCTTATCTGGCTGATGGTTCTGAATACAGTGGGGACTATGGTGATGCAATTAATTTGGAATTCTTGAAAGGTTTTCACCGAAGAAGAGTTCAAGTTTTAGCTGAATCTGGTGCTGATCTGATAGCATTTGAAACAATACCAAATAAGCTAGAAGCACAGGCTTTTTCTGAGCTTCTTGAAGAAGGCATAAATATTCCTGCATGGTTTGCGTTTAATTCCAAAGATGGTGTAAATGTGGTCAGTGGTGATTCATTAGCCGAATGTGCTGCAATTGCTGATTCGTGCAAGAAAGTTATTGCTGTAGGAATCAACTGCACCCCTCCTAGATTCATTGGTGGTCTTATTTCAACAATAAAAAAGGTGACAAATAAACCGATACTTATTTATCCTAATAGTGGTGAAAGTTATGATGCTCAACTAAAACAGTGGGTGCAAAACACTGGAGTTCTAGAAGAGGATTTTGTTTCATATGTGAACACATGGTGCGAAATGGGTGCATCGCTTGTTGGTGGCTGCTGCAGAACTACCCCCGACACGATTAGAGCCATTCATAAGACTCTTCCCAGCAGATCTGCTCCGACACCCGTTGTTGAAAATCTTCAAAGTGAGTCGGGACGTCTGATGATCAAAACCGCATAG 1068 43.16 MSNVAVDTLMSDFLRKSGGVALIDGGLATELERYGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADIIITASYQATIQGFEAKGYSSEDGESMLRKSVEIACEARELYHQRCCESSVDYTGDGRIFKQRPILVAASVGSYGAYLADGSEYSGDYGDAINLEFLKGFHRRRVQVLAESGADLIAFETIPNKLEAQAFSELLEEGINIPAWFAFNSKDGVNVVSGDSLAECAAIADSCKKVIAVGINCTPPRFIGGLISTIKKVTNKPILIYPNSGESYDAQLKQWVQNTGVLEEDFVSYVNTWCEMGASLVGGCCRTTPDTIRAIHKTLPSRSAPTPVVENLQSESGRLMIKTA 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03731 355 Gene3D - 10 329 IPR036589 -
Smso1g03731 355 ProSiteProfiles Homocysteine-binding domain profile. 9 330 IPR003726 -
Smso1g03731 355 PANTHER ZGC:172121 12 332 IPR051486 GO:0008898(PANTHER)|GO:0009086(PANTHER)|GO:0033528(PANTHER)
Smso1g03731 355 Pfam Homocysteine S-methyltransferase 22 329 IPR003726 -
Smso1g03731 355 FunFam Homocysteine S-methyltransferase 10 329 - -
Smso1g03731 355 PIRSF BHMT 285 351 IPR017226 GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro)
Smso1g03731 355 PIRSF BHMT 9 123 IPR017226 GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro)
Smso1g03731 355 SUPERFAMILY Homocysteine S-methyltransferase 17 333 IPR036589 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03731 K00547 homocysteine S-methyltransferase [EC:2.1.1.10]
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Event-related genes

Select Gene_1 Gene_2 Event_name
147371 Smso17g00272 Smso1g03731
149227 Smso1g03731 Smso8g00303
338023 Smso28g00419 Smso1g03731
357464 Smso1g03731 Smso28g00419
429102 Smso1g03731 Smso28g00419
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr19:15637307 Smso1g03731 Smso-Chr1:124006655 dispersed
Smso Smso-Chr1:124006655 Smso17g00272 Smso-Chr17:2976350 wgd
Smso Smso-Chr1:124006655 Smso28g00419 Smso-Chr28:11146860 wgd
Smso Smso-Chr1:124006655 Smso8g00303 Smso-Chr8:4245933 wgd