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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03737 ATGGACAATTTGTGGCAGGAGTTCAATTCCGCCGGCGCATTTCACTTGCCGGAGAGTCCAAGGAAGCCGATGGAGTTCTTATCCAGGTCATGGAGTGACGCTGCTCTTCAAACTCTGCATTCTCCGCCGTCTCCATTGATTTCTAAGTCCAGAACAGCCGCTGTTGTTACGCCGGAGACTACCGGTGTTTTCGCCGTCGACGCGGCGGAGGACTCAGATGTATCGCCGTTAGCTTCAGGGAGACTGTCACACAGTAGCGGACCACTGAATCCATCGCACATGGAGGAAACCGATAGTCTGCACATCTCGCCGTCCGACGAGTACGAAGACGTCGTCAAGTTGCTGCAAACCGCGGCTTTATATCTTTTGTTTGAGTTATTAAGGTTGATAAAGAGTTGTTTATCTACTGCACAGTTTTTGGCTGCTGGTTTATTGGCTGCCGCATCAGTTACTTGTTTAGAGGATAATGAGTTATGGTTTTACTCGTTTAGATTGAATAGGGTCGTGTCTTAA 513 48.73 MDNLWQEFNSAGAFHLPESPRKPMEFLSRSWSDAALQTLHSPPSPLISKSRTAAVVTPETTGVFAVDAAEDSDVSPLASGRLSHSSGPLNPSHMEETDSLHISPSDEYEDVVKLLQTAALYLLFELLRLIKSCLSTAQFLAAGLLAAASVTCLEDNELWFYSFRLNRVVS 170
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03737 170 MobiDBLite consensus disorder prediction 75 99 - -
Smso1g03737 170 MobiDBLite consensus disorder prediction 78 98 - -
Smso1g03737 170 Pfam Auxin canalisation 17 117 IPR008546 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03737 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
141662 Smso10g00777 Smso1g03737
149230 Smso1g03737 Smso20g00901
149231 Smso1g03737 Smso20g01623
429108 Smso1g03737 Smso20g01623
429109 Smso1g03737 Smso29g01426
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:124141398 Smso10g00777 Smso-Chr10:8287598 wgd
Smso Smso-Chr1:124141398 Smso20g00901 Smso-Chr20:15481765 wgd
Smso Smso-Chr1:124141398 Smso20g01623 Smso-Chr20:53784125 wgd
Smso Smso-Chr1:124141398 Smso29g01426 Smso-Chr29:39373713 wgd